5 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SAC6	Fimbrin. (649 aa)
	D7B24_001035	Uncharacterized protein. (161 aa)
	D7B24_001024	Methyltransf_25 domain-containing protein. (355 aa)
	D7B24_002031	Uncharacterized protein. (854 aa)
	D7B24_008602	CRIB domain-containing protein. (877 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_001024	SAC6	A0A3M9Y0F9	A0A3M9Y5B0	Methyltransf_25 domain-containing protein.	Fimbrin.	0.518
D7B24_001035	D7B24_002031	A0A3M9Y4A3	A0A3M9XYI4	Uncharacterized protein.	Uncharacterized protein.	0.851
D7B24_001035	D7B24_008602	A0A3M9Y4A3	A0A3M9Y7B0	Uncharacterized protein.	CRIB domain-containing protein.	0.838
D7B24_001035	SAC6	A0A3M9Y4A3	A0A3M9Y5B0	Uncharacterized protein.	Fimbrin.	0.695
D7B24_002031	D7B24_001035	A0A3M9XYI4	A0A3M9Y4A3	Uncharacterized protein.	Uncharacterized protein.	0.851
D7B24_008602	D7B24_001035	A0A3M9Y7B0	A0A3M9Y4A3	CRIB domain-containing protein.	Uncharacterized protein.	0.838
SAC6	D7B24_001024	A0A3M9Y5B0	A0A3M9Y0F9	Fimbrin.	Methyltransf_25 domain-containing protein.	0.518
SAC6	D7B24_001035	A0A3M9Y5B0	A0A3M9Y4A3	Fimbrin.	Uncharacterized protein.	0.695