STRINGSTRING
D7B24_002913 D7B24_002913 D7B24_004424 D7B24_004424 D7B24_004236 D7B24_004236 D7B24_005372 D7B24_005372 THG1 THG1 GNL3 GNL3 D7B24_004269 D7B24_004269 TRM44 TRM44 ENP1 ENP1 D7B24_003411 D7B24_003411 D7B24_004397 D7B24_004397 NSUN5 NSUN5 D7B24_004526 D7B24_004526 LAS1 LAS1 D7B24_003649 D7B24_003649 D7B24_003072 D7B24_003072 D7B24_003060 D7B24_003060 SPB1 SPB1 D7B24_003884 D7B24_003884 UTP11 UTP11 D7B24_002834 D7B24_002834 D7B24_002946 D7B24_002946 TRM10 TRM10 RRP40 RRP40 RVB2 RVB2 D7B24_002405 D7B24_002405 RLI1 RLI1 ROK1 ROK1 ERB1 ERB1 D7B24_002100 D7B24_002100 UBA4 UBA4 D7B24_004089 D7B24_004089 ELP2 ELP2 USB1 USB1 D7B24_002287 D7B24_002287 RRP8 RRP8 AIM41 AIM41 LSM5 LSM5 RPL35 RPL35 NOP2 NOP2 URM1 URM1 D7B24_002099 D7B24_002099 D7B24_003127 D7B24_003127 GTPBP4 GTPBP4 RPS16 RPS16 D7B24_001277 D7B24_001277 D7B24_001246 D7B24_001246 D7B24_002061 D7B24_002061 D7B24_001423 D7B24_001423 D7B24_001024 D7B24_001024 D7B24_001034 D7B24_001034 CBR1 CBR1 NOP7 NOP7 D7B24_001670 D7B24_001670 RPC11 RPC11 D7B24_002945 D7B24_002945 TRM2 TRM2 D7B24_005588 D7B24_005588 SNU13 SNU13 PUS1 PUS1 NHP2 NHP2 D7B24_006922 D7B24_006922 D7B24_005402 D7B24_005402 D7B24_005854 D7B24_005854 D7B24_005151 D7B24_005151 D7B24_004809 D7B24_004809 REX3 REX3 RPS28A_1 RPS28A_1 D7B24_005626 D7B24_005626 D7B24_005856 D7B24_005856 DDX51 DDX51 SEN54 SEN54 RPS8A RPS8A SPB4 SPB4 LOS1 LOS1 NOP58 NOP58 D7B24_004324 D7B24_004324 RRP3 RRP3 D7B24_004360 D7B24_004360 D7B24_005848 D7B24_005848 SOF1 SOF1 D7B24_003615 D7B24_003615 NOP10 NOP10 DBP2 DBP2 TRM61 TRM61 TRMT12 TRMT12 IMP4 IMP4 D7B24_003616 D7B24_003616 DPH3 DPH3 D7B24_003207 D7B24_003207 D7B24_002701 D7B24_002701 NOP9 NOP9 NOB1 NOB1 D7B24_004177 D7B24_004177 UTP6 UTP6 D7B24_002121 D7B24_002121 D7B24_003564 D7B24_003564 PRP43 PRP43 PTC1 PTC1 UTP20 UTP20 XRN2 XRN2 D7B24_002173 D7B24_002173 D7B24_003017 D7B24_003017 BMS1 BMS1 D7B24_001452 D7B24_001452 TRM6 TRM6 D7B24_002446 D7B24_002446 D7B24_003600 D7B24_003600 LSM3 LSM3 D7B24_002684 D7B24_002684 TAD2 TAD2 RPS21 RPS21 SKI6 SKI6 D7B24_007471 D7B24_007471 HAS1 HAS1 GRC3 GRC3 D7B24_007422 D7B24_007422 D7B24_000277 D7B24_000277 D7B24_005912 D7B24_005912 ESF1 ESF1 D7B24_003016 D7B24_003016 FAL1 FAL1 LSM7 LSM7 D7B24_005025 D7B24_005025 D7B24_000655 D7B24_000655 RRF-1 RRF-1 D7B24_000685 D7B24_000685 RRP6 RRP6 D7B24_007515 D7B24_007515 D7B24_002210 D7B24_002210 RPF2 RPF2 D7B24_003539 D7B24_003539 WDR3 WDR3 D7B24_005043 D7B24_005043 D7B24_000006 D7B24_000006 LSM6 LSM6 D7B24_003426 D7B24_003426 D7B24_000047 D7B24_000047 D7B24_007520 D7B24_007520 D7B24_005953 D7B24_005953 D7B24_000058 D7B24_000058 D7B24_000245 D7B24_000245 RRP9 RRP9 NOP12 NOP12 D7B24_005928 D7B24_005928 D7B24_000157 D7B24_000157 CWC24 CWC24 D7B24_005046 D7B24_005046 D7B24_008122 D7B24_008122 NSA2 NSA2 D7B24_007484 D7B24_007484 SEN2 SEN2 D7B24_005981 D7B24_005981 D7B24_006002 D7B24_006002 D7B24_003431 D7B24_003431 D7B24_003493 D7B24_003493 D7B24_000012 D7B24_000012 D7B24_000063 D7B24_000063 GAR1_1 GAR1_1 EXOSC8 EXOSC8 DNAJC21 DNAJC21 RRP5 RRP5 RPL7 RPL7 EMG1 EMG1 D7B24_000800 D7B24_000800 KAE1 KAE1 ALA1 ALA1 NCS6 NCS6 D7B24_000533 D7B24_000533 D7B24_000883 D7B24_000883 D7B24_001224 D7B24_001224 D7B24_000832 D7B24_000832 D7B24_002053 D7B24_002053 WDR4 WDR4 YTM1 YTM1 D7B24_002293 D7B24_002293 D7B24_000326 D7B24_000326 RPL8B RPL8B IMP3 IMP3 NFS1 NFS1 RPS13 RPS13 D7B24_000733 D7B24_000733 MTO1 MTO1 RPS7 RPS7 D7B24_000444 D7B24_000444 WDR6 WDR6 KRE33 KRE33 RPS14 RPS14 TRM9 TRM9 RRP46 RRP46 MTR4 MTR4 D7B24_009273 D7B24_009273 RPS28A_2 RPS28A_2 D7B24_009589 D7B24_009589 D7B24_001576 D7B24_001576 LSM8 LSM8 RPP40 RPP40 D7B24_009085 D7B24_009085 D7B24_009082 D7B24_009082 D7B24_009062 D7B24_009062 NOL6 NOL6 TSR3 TSR3 UTP5 UTP5 D7B24_008870 D7B24_008870 MAK5 MAK5 UTP13 UTP13 D7B24_008953 D7B24_008953 UTP10 UTP10 DUS3 DUS3 D7B24_008972 D7B24_008972 LSM4 LSM4 RRP4 RRP4 CSL4 CSL4 KRR1 KRR1 D7B24_008812 D7B24_008812 MRD1 MRD1 D7B24_008483 D7B24_008483 MDN1 MDN1 D7B24_009077 D7B24_009077 D7B24_008254 D7B24_008254 D7B24_008813 D7B24_008813 TRM5 TRM5 NOP56 NOP56 D7B24_008330 D7B24_008330 NOP4 NOP4 D7B24_008859 D7B24_008859 NOP14 NOP14 DBP7 DBP7 D7B24_007772 D7B24_007772 D7B24_007718 D7B24_007718 D7B24_007586 D7B24_007586 D7B24_009270 D7B24_009270 NCS2 NCS2 CBF5 CBF5 PAP1 PAP1 D7B24_007780 D7B24_007780 D7B24_008809 D7B24_008809 D7B24_007784 D7B24_007784 KRI1 KRI1 PPM2 PPM2 D7B24_008345 D7B24_008345 BFR2 BFR2 RIOK2 RIOK2 D7B24_007186 D7B24_007186 D7B24_007359 D7B24_007359 D7B24_007565 D7B24_007565 D7B24_007300 D7B24_007300 D7B24_008347 D7B24_008347 NOP16 NOP16 UTP4 UTP4 UTP7 UTP7 D7B24_007281 D7B24_007281 PXR1 PXR1 RPL10A RPL10A GTPBP3 GTPBP3 WDR36 WDR36 DBP3 DBP3 ECM16 ECM16 D7B24_006564 D7B24_006564 D7B24_007852 D7B24_007852 D7B24_006893 D7B24_006893 ELP3 ELP3 UTP25 UTP25 D7B24_006441 D7B24_006441 RRP36 RRP36 ABT1 ABT1 D7B24_007089 D7B24_007089 D7B24_007099 D7B24_007099 D7B24_007026 D7B24_007026 RPL30 RPL30 DBP8 DBP8 D7B24_007383 D7B24_007383 TRMT1 TRMT1 D7B24_006387 D7B24_006387 D7B24_007317 D7B24_007317 D7B24_006302 D7B24_006302 D7B24_007884 D7B24_007884 D7B24_006634 D7B24_006634 D7B24_007789 D7B24_007789 D7B24_006279 D7B24_006279 RRP12 RRP12 D7B24_005841 D7B24_005841 MRH4 MRH4 D7B24_006272 D7B24_006272 D7B24_005715 D7B24_005715 DBP10 DBP10 TYW1 TYW1 NOP1 NOP1 D7B24_005829 D7B24_005829 EFG1 EFG1 DIM1 DIM1 MTR3 MTR3 REXO4 REXO4 D7B24_005672 D7B24_005672 D7B24_007230 D7B24_007230 PUS3 PUS3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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D7B24_002913Uncharacterized protein. (202 aa)
D7B24_004424Uncharacterized protein. (365 aa)
D7B24_004236Uncharacterized protein. (340 aa)
D7B24_005372Uncharacterized protein. (329 aa)
THG1tRNA-His guanylyltransferase. (339 aa)
GNL3Guanine nucleotide-binding protein-like 3. (545 aa)
D7B24_004269Brix domain-containing protein. (420 aa)
TRM44tRNA(Ser) Um(44) 2'-O-methyltransferase. (497 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
D7B24_003411Uncharacterized protein. (303 aa)
D7B24_004397Uncharacterized protein. (269 aa)
NSUN5Putative 28S rRNA (Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (584 aa)
D7B24_004526Uncharacterized protein. (375 aa)
LAS1rRNA-processing protein las1. (290 aa)
D7B24_003649Uncharacterized protein. (900 aa)
D7B24_003072Uncharacterized protein. (365 aa)
D7B24_003060ThiF domain-containing protein. (510 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
D7B24_003884Uncharacterized protein. (193 aa)
UTP11Small subunit (SSU) processome component. (269 aa)
D7B24_002834Queuosine salvage protein; Involved in salvaging queuosine. (320 aa)
D7B24_002946Uncharacterized protein. (81 aa)
TRM10tRNA (Guanine(9)-N(1))-methyltransferase. (455 aa)
RRP40Exosome non-catalytic core subunit rrp40. (245 aa)
RVB2RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (470 aa)
D7B24_002405WD_REPEATS_REGION domain-containing protein. (468 aa)
RLI1Fe-S cluster-binding ribosome biosynthesis protein. (607 aa)
ROK1RNA-dependent ATPase rok1. (768 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
D7B24_002100Uncharacterized protein. (601 aa)
UBA4Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...] (478 aa)
D7B24_004089Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (908 aa)
ELP2Elongator subunit elp2. (828 aa)
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (345 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
RRP8Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (572 aa)
AIM41Altered inheritance of mitochondria protein 41. (202 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
RPL3560S ribosomal protein L35. (125 aa)
NOP2rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (766 aa)
URM1Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by the MOCS3 homolog UBA4. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target pr [...] (104 aa)
D7B24_002099Uncharacterized protein. (423 aa)
D7B24_003127Uncharacterized protein. (941 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
RPS1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
D7B24_001277SpoU_sub_bind domain-containing protein. (619 aa)
D7B24_001246Ipi1_N domain-containing protein. (339 aa)
D7B24_002061RNase III domain-containing protein. (413 aa)
D7B24_001423AA_TRNA_LIGASE_II_ALA domain-containing protein. (265 aa)
D7B24_001024Methyltransf_25 domain-containing protein. (355 aa)
D7B24_001034Uncharacterized protein. (221 aa)
CBR1NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (309 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
D7B24_001670Uncharacterized protein. (115 aa)
RPC11DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
D7B24_002945Uncharacterized protein. (281 aa)
TRM2tRNA(M5U54)methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (559 aa)
D7B24_005588Uncharacterized protein. (128 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
PUS1tRNA pseudouridine synthase 1. (626 aa)
NHP2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (232 aa)
D7B24_006922Uncharacterized protein. (284 aa)
D7B24_005402Exonuclease domain-containing protein. (449 aa)
D7B24_005854Uncharacterized protein. (694 aa)
D7B24_005151Uncharacterized protein. (403 aa)
D7B24_004809Uncharacterized protein. (206 aa)
REX3RNA exonuclease 3. (687 aa)
RPS28A_140S ribosomal protein S28. (68 aa)
D7B24_005626RNase III domain-containing protein. (426 aa)
D7B24_005856Uncharacterized protein. (237 aa)
DDX51ATP-dependent RNA helicase ddx51; Belongs to the DEAD box helicase family. (775 aa)
SEN54tRNA-splicing endonuclease subunit sen54. (515 aa)
RPS8A40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
SPB4RNA helicase. (632 aa)
LOS1Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1011 aa)
NOP58Nucleolar protein 58. (655 aa)
D7B24_004324TYW3 domain-containing protein. (324 aa)
RRP3Ribosomal RNA processing protein; Belongs to the DEAD box helicase family. (487 aa)
D7B24_004360Uncharacterized protein. (339 aa)
D7B24_005848Uncharacterized protein. (585 aa)
SOF1rRNA-processing protein sof1. (448 aa)
D7B24_003615CFEM domain-containing protein. (347 aa)
NOP10snoRNP complex protein. (66 aa)
DBP2ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (560 aa)
TRM61tRNA (Adenine-N(1)-)-methyltransferase catalytic subunit trm61. (514 aa)
TRMT12tRNA wybutosine-synthesizing protein 2. (430 aa)
IMP4SnoRNA-binding rRNA-processing protein imp4. (293 aa)
D7B24_003616HIT-type domain-containing protein. (546 aa)
DPH3Diphthamide biosynthesis protein 3. (92 aa)
D7B24_003207Exonuclease domain-containing protein. (227 aa)
D7B24_002701Uncharacterized protein. (480 aa)
NOP9Nucleolar protein 9. (748 aa)
NOB1Nin1 binding protein. (472 aa)
D7B24_004177Brix domain-containing protein. (462 aa)
UTP6U3 snoRNP protein. (416 aa)
D7B24_002121RRM domain-containing protein. (386 aa)
D7B24_003564SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (936 aa)
PRP43DEAH-box ATP-dependent RNA helicase prp43. (770 aa)
PTC1Protein phosphatase 2C 1. (683 aa)
UTP20U3 snoRNP protein. (2640 aa)
XRN25'-3' exoribonuclease 2. (821 aa)
D7B24_002173Uncharacterized protein. (370 aa)
D7B24_003017Uncharacterized protein. (330 aa)
BMS1Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
D7B24_001452Uncharacterized protein. (1028 aa)
TRM6tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6. (625 aa)
D7B24_002446J domain-containing protein. (444 aa)
D7B24_003600Uncharacterized protein. (233 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
D7B24_002684Uncharacterized protein. (374 aa)
TAD2tRNA(Adenine34) deaminase. (405 aa)
RPS2140S ribosomal protein S21. (87 aa)
SKI6Exosome non-catalytic core component. (265 aa)
D7B24_007471Uncharacterized protein. (343 aa)
HAS1RNA helicase. (706 aa)
GRC3Polynucleotide 5'-hydroxyl-kinase grc3. (743 aa)
D7B24_007422TGT domain-containing protein. (455 aa)
D7B24_000277Uncharacterized protein. (262 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
ESF1Pre-rRNA-processing protein esf1. (699 aa)
D7B24_003016RNA-dependent RNA polymerase. (476 aa)
FAL1RNA helicase; Belongs to the DEAD box helicase family. (401 aa)
LSM7Sm-like protein lsm7. (141 aa)
D7B24_005025Uncharacterized protein. (181 aa)
D7B24_000655Uncharacterized protein. (214 aa)
RRF-1RNA-dependend RNA polymerase 1. (1541 aa)
D7B24_000685Uncharacterized protein. (185 aa)
RRP6Exosome nuclease subunit. (841 aa)
D7B24_007515Uncharacterized protein. (1404 aa)
D7B24_002210tRNA dimethylallyltransferase. (492 aa)
RPF2rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
D7B24_003539Fe2OG dioxygenase domain-containing protein. (343 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
D7B24_005043Uncharacterized protein. (284 aa)
D7B24_000006DUF3453 domain-containing protein. (719 aa)
LSM6U4/U6-U5 snRNP complex subunit lsm6. (84 aa)
D7B24_003426Uncharacterized protein. (940 aa)
D7B24_000047PPM-type phosphatase domain-containing protein. (786 aa)
D7B24_007520Uncharacterized protein. (342 aa)
D7B24_005953rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (118 aa)
D7B24_000058RNA-dependent RNA polymerase. (906 aa)
D7B24_000245Uncharacterized protein; Belongs to the CGI121/TPRKB family. (196 aa)
RRP9Pre-rRNA processing protein. (606 aa)
NOP12Nucleolar protein 12. (550 aa)
D7B24_005928Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
D7B24_000157Uncharacterized protein. (710 aa)
CWC24RNA-splicing factor. (336 aa)
D7B24_005046Uncharacterized protein. (413 aa)
D7B24_008122Uncharacterized protein. (457 aa)
NSA2Ribosome bioproteinsis protein. (284 aa)
D7B24_007484Uncharacterized protein. (745 aa)
SEN2tRNA splicing endonuclease subunit sen2. (555 aa)
D7B24_005981Uncharacterized protein. (402 aa)
D7B24_006002WD_REPEATS_REGION domain-containing protein. (598 aa)
D7B24_003431CMP/dCMP-type deaminase domain-containing protein. (177 aa)
D7B24_003493WD_REPEATS_REGION domain-containing protein. (634 aa)
D7B24_000012Exonuclease domain-containing protein. (727 aa)
D7B24_000063WD_REPEATS_REGION domain-containing protein. (535 aa)
GAR1_1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (155 aa)
EXOSC8Exosome complex component RRP43. (336 aa)
DNAJC21DnaJ sub C member 21. (560 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
RPL760S ribosomal protein L7. (262 aa)
EMG118S rRNA pseudouridine methyltransferase. (276 aa)
D7B24_000800Sas10 domain-containing protein. (668 aa)
KAE1tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. KAE1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. The EKC/KEOPS complex also promotes both telomere uncapping and telomere elongation. Th [...] (385 aa)
ALA1Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (958 aa)
NCS6Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (399 aa)
D7B24_000533Uncharacterized protein. (337 aa)
D7B24_000883PDCD2_C domain-containing protein. (431 aa)
D7B24_001224rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (619 aa)
D7B24_000832THUMP domain-containing protein. (340 aa)
D7B24_002053Uncharacterized protein. (383 aa)
WDR4tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family. (564 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
D7B24_002293Uncharacterized protein. (414 aa)
D7B24_000326HAD_SAK_1 domain-containing protein. (586 aa)
RPL8B60S ribosomal protein L8B. (261 aa)
IMP3Small subunit (SSU) processome component. (183 aa)
NFS1Cysteine desulfurase. (522 aa)
RPS13Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
D7B24_00073325S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (294 aa)
MTO1Mitochondrial Translation Optimization. (693 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
D7B24_000444Lactamase_B domain-containing protein. (329 aa)
WDR6WD repeat-containing protein 6. (1121 aa)
KRE33RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
RPS14Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
TRM9tRNA methyltransferase, has a role in tRNA modification. (282 aa)
RRP46Exosome non-catalytic core subunit rrp46. (249 aa)
MTR4ATP-dependent RNA helicase mtr4. (1106 aa)
D7B24_009273Uncharacterized protein. (819 aa)
RPS28A_240S ribosomal protein S28. (68 aa)
D7B24_009589Uncharacterized protein. (876 aa)
D7B24_001576RNase_PH domain-containing protein. (366 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
RPP40Ribonuclease P protein subunit p40. (338 aa)
D7B24_009085TruB_N domain-containing protein. (505 aa)
D7B24_009082Sec2p domain-containing protein. (329 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
NOL6U3 small nucleolar RNA-associated protein 22. (1102 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (412 aa)
UTP5Small subunit (SSU) processome component. (433 aa)
D7B24_008870Fcf2 domain-containing protein. (197 aa)
MAK5ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (787 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
D7B24_008953AA_TRNA_LIGASE_II domain-containing protein. (588 aa)
UTP10SnoRNA-binding rRNA-processing protein utp10. (1809 aa)
DUS3tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. (742 aa)
D7B24_008972Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs. (398 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (180 aa)
RRP4Exosome non-catalytic core subunit rrp4. (353 aa)
CSL4Exosome 3'->5 exonuclease subunit ski4 (Csl4). (211 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
D7B24_008812tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance. (468 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
D7B24_008483MJ1316 domain-containing protein. (157 aa)
MDN1AAA ATPase midasin. (4969 aa)
D7B24_009077Uncharacterized protein. (200 aa)
D7B24_008254Uncharacterized protein. (471 aa)
D7B24_008813Uncharacterized protein. (601 aa)
TRM5tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family. (473 aa)
NOP56snoRNP complex protein nop56. (510 aa)
D7B24_008330FtsJ domain-containing protein. (202 aa)
NOP4RNA recognition motif-containing protein. (785 aa)
D7B24_008859Sen15 domain-containing protein. (163 aa)
NOP14Nucleolar complex protein 14. (915 aa)
DBP7ATP-dependent RNA helicase dbp7; Belongs to the DEAD box helicase family. (770 aa)
D7B24_007772PseudoU_synth_2 domain-containing protein. (549 aa)
D7B24_007718C3H1-type domain-containing protein. (1118 aa)
D7B24_007586BUD22 domain-containing protein. (496 aa)
D7B24_009270UPF0020 domain-containing protein. (444 aa)
NCS2Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (397 aa)
CBF5Centromere/microtubule-binding protein cbf5. (465 aa)
PAP1Polynucleotide adenylyltransferase. (604 aa)
D7B24_007780Uncharacterized protein. (735 aa)
D7B24_008809Uncharacterized protein. (815 aa)
D7B24_007784Bms1-type G domain-containing protein. (820 aa)
KRI1KRRI-Interacting protein 1. (690 aa)
PPM2tRNA methyltransferase ppm2. (717 aa)
D7B24_008345Uncharacterized protein. (342 aa)
BFR2rRNA-processing protein bfr2. (594 aa)
RIOK2Serine/threonine-protein kinase RIO2. (419 aa)
D7B24_007186Uncharacterized protein. (1127 aa)
D7B24_007359YrdC-like domain-containing protein. (445 aa)
D7B24_007565Protein kinase domain-containing protein. (307 aa)
D7B24_007300DUF2428 domain-containing protein. (1535 aa)
D7B24_008347Uncharacterized protein. (882 aa)
NOP16Nucleolar protein 16. (231 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
D7B24_007281Uncharacterized protein. (248 aa)
PXR1Telomerase inhibitor. (362 aa)
RPL10ARibosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
GTPBP3tRNA modification GTPase gtpbp3, mitochondrial. (519 aa)
WDR36WD repeat-containing protein 36. (1042 aa)
DBP3RNA-dependent ATPase; Belongs to the DEAD box helicase family. (595 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1197 aa)
D7B24_006564DUF2431 domain-containing protein. (402 aa)
D7B24_007852Uncharacterized protein. (487 aa)
D7B24_006893Formyl_trans_N domain-containing protein. (405 aa)
ELP3Elongator subunit. (573 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (773 aa)
D7B24_006441Uncharacterized protein. (485 aa)
RRP36rRNA bioproteinsis protein rrp36. (299 aa)
ABT1Activator of basal transcription 1. (315 aa)
D7B24_007089Uncharacterized protein. (386 aa)
D7B24_007099Ribosomal_L28e domain-containing protein. (321 aa)
D7B24_007026Plus3 domain-containing protein. (607 aa)
RPL3060S ribosomal protein L30. (110 aa)
DBP8Putative RNA helicase; Belongs to the DEAD box helicase family. (556 aa)
D7B24_007383zf-LYAR domain-containing protein. (387 aa)
TRMT1tRNA methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (1471 aa)
D7B24_006387Uncharacterized protein. (703 aa)
D7B24_007317Uncharacterized protein. (308 aa)
D7B24_006302RIX1 domain-containing protein. (761 aa)
D7B24_007884Uncharacterized protein. (916 aa)
D7B24_006634Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] (407 aa)
D7B24_007789Uncharacterized protein. (710 aa)
D7B24_006279TRUD domain-containing protein. (801 aa)
RRP12Pre-rRNA processing protein. (1321 aa)
D7B24_005841Uncharacterized protein. (292 aa)
MRH4RNA helicase. (468 aa)
D7B24_006272Uncharacterized protein. (1020 aa)
D7B24_005715Uncharacterized protein. (175 aa)
DBP10ATP-dependent RNA helicase DBP10. (902 aa)
TYW1S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase. (788 aa)
NOP1Small subunit processome complex component. (325 aa)
D7B24_005829Uncharacterized protein. (734 aa)
EFG118S rRNA maturation protein. (283 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
MTR33'-5'-exoribonuclease. (291 aa)
REXO4REX4, RNA exonuclease 4. (340 aa)
D7B24_005672Uncharacterized protein. (1303 aa)
D7B24_007230Uncharacterized protein. (449 aa)
PUS3tRNA pseudouridine synthase 3. (616 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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