56 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_004424	Uncharacterized protein. (365 aa)
	GNL3	Guanine nucleotide-binding protein-like 3. (545 aa)
	D7B24_004269	Brix domain-containing protein. (420 aa)
	D7B24_003851	Uncharacterized protein. (604 aa)
	LAS1	rRNA-processing protein las1. (290 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
	RPL35B	60S ribosomal protein L35B. (109 aa)
	RLI1	Fe-S cluster-binding ribosome biosynthesis protein. (607 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	SDAD1	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (751 aa)
	NLE1	Notchless protein 1. (515 aa)
	RPL35	60S ribosomal protein L35. (125 aa)
	D7B24_001573	Uncharacterized protein. (784 aa)
	NOP2	rRNA (Cytosine-C5-)-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (766 aa)
	GTPBP4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
	MRTO4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
	DNAJC21	DnaJ sub C member 21. (560 aa)
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	RPL7	60S ribosomal protein L7. (262 aa)
	D7B24_002053	Uncharacterized protein. (383 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	RPL8B	60S ribosomal protein L8B. (261 aa)
	RPL25	60S ribosomal protein L25. (157 aa)
	RPP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	MDN1	AAA ATPase midasin. (4969 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
	NOP4	RNA recognition motif-containing protein. (785 aa)
	JIP5	WD repeat-containing protein jip5. (431 aa)
	RPL26A	60S ribosomal protein L26A. (136 aa)
	D7B24_007186	Uncharacterized protein. (1127 aa)
	NOP16	Nucleolar protein 16. (231 aa)
	SPATA5	Spermatoproteinsis associated protein 5. (756 aa)
	NOC2	Nucleolar Complex 2 protein. (805 aa)
	RPL10A	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	D7B24_007872	CP-type G domain-containing protein. (643 aa)
	LOC1	60S ribosomal subunit assembly/export protein. (202 aa)
	D7B24_007099	Ribosomal_L28e domain-containing protein. (321 aa)
	D7B24_007884	Uncharacterized protein. (916 aa)
	RPL5	60S ribosomal protein L5. (299 aa)
	PUF6	Pumilio domain member 6. (708 aa)
	D7B24_006660	Uncharacterized protein. (678 aa)
	NIP7	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
	D7B24_007230	Uncharacterized protein. (449 aa)
	NHP2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (232 aa)
	D7B24_004360	Uncharacterized protein. (339 aa)
	D7B24_003616	HIT-type domain-containing protein. (546 aa)
	D7B24_004177	Brix domain-containing protein. (462 aa)
	D7B24_002121	RRM domain-containing protein. (386 aa)
	D7B24_002679	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	D7B24_000698	WD_REPEATS_REGION domain-containing protein. (500 aa)
	RPF2	rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)
	D7B24_005060	Ribosomal_L14e domain-containing protein. (147 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	D7B24_000157	Uncharacterized protein. (710 aa)
	NSA2	Ribosome bioproteinsis protein. (284 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000157	D7B24_002053	A0A3M9YMK8	A0A3M9Y1L7	Uncharacterized protein.	Uncharacterized protein.	0.411
D7B24_000157	D7B24_002121	A0A3M9YMK8	A0A3M9YG17	Uncharacterized protein.	RRM domain-containing protein.	0.621
D7B24_000157	D7B24_002679	A0A3M9YMK8	A0A3M9YGW0	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.414
D7B24_000157	D7B24_005060	A0A3M9YMK8	A0A3M9YLP2	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.414
D7B24_000157	ERB1	A0A3M9YMK8	A0A3M9XYB3	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.462
D7B24_000157	GNL3	A0A3M9YMK8	A0A3M9XVR1	Uncharacterized protein.	Guanine nucleotide-binding protein-like 3.	0.848
D7B24_000157	GTPBP4	A0A3M9YMK8	A0A3M9XZZ7	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.853
D7B24_000157	MRTO4	A0A3M9YMK8	A0A3M9Y008	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.666
D7B24_000157	NLE1	A0A3M9YMK8	A0A3M9XYN8	Uncharacterized protein.	Notchless protein 1.	0.892
D7B24_000157	NOC2	A0A3M9YMK8	A0A3M9Y8H9	Uncharacterized protein.	Nucleolar Complex 2 protein.	0.411
D7B24_000157	NOP4	A0A3M9YMK8	A0A3M9Y5V0	Uncharacterized protein.	RNA recognition motif-containing protein.	0.485
D7B24_000157	NOP7	A0A3M9YMK8	A0A3M9Y0K6	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.614
D7B24_000157	NSA2	A0A3M9YMK8	A0A3M9YN29	Uncharacterized protein.	Ribosome bioproteinsis protein.	0.586
D7B24_000157	RPF2	A0A3M9YMK8	A0A3M9YL32	Uncharacterized protein.	rRNA-binding ribosome biosynthesis protein rpf2.	0.434
D7B24_000157	RPL10A	A0A3M9YMK8	A0A3M9Y8M6	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.452
D7B24_000157	RPL25	A0A3M9YMK8	A0A3M9Y324	Uncharacterized protein.	60S ribosomal protein L25.	0.581
D7B24_000157	RPL26A	A0A3M9YMK8	A0A3M9Y6W3	Uncharacterized protein.	60S ribosomal protein L26A.	0.471
D7B24_000157	RPL35	A0A3M9YMK8	A0A3M9XZD1	Uncharacterized protein.	60S ribosomal protein L35.	0.417
D7B24_000157	RPL35B	A0A3M9YMK8	A0A3M9XXV8	Uncharacterized protein.	60S ribosomal protein L35B.	0.414
D7B24_000157	RPL5	A0A3M9YMK8	A0A3M9YAH6	Uncharacterized protein.	60S ribosomal protein L5.	0.544