STRINGSTRING
ROK1 ROK1 RPS5 RPS5 RPS19 RPS19 RRP12 RRP12 ECM16 ECM16 D7B24_007281 D7B24_007281 UTP7 UTP7 D7B24_007870 D7B24_007870 D7B24_005588 D7B24_005588 SNU13 SNU13 UTP4 UTP4 RIOK2 RIOK2 BFR2 BFR2 KRI1 KRI1 D7B24_007784 D7B24_007784 D7B24_007869 D7B24_007869 D7B24_008809 D7B24_008809 D7B24_004809 D7B24_004809 RPS28A_1 RPS28A_1 RPS8A RPS8A NOP58 NOP58 SOF1 SOF1 RSM19 RSM19 RPS15 RPS15 D7B24_004768 D7B24_004768 RPS0 RPS0 NOB1 NOB1 UTP6 UTP6 BMS1 BMS1 RPS21 RPS21 D7B24_007780 D7B24_007780 D7B24_005912 D7B24_005912 D7B24_000703 D7B24_000703 D7B24_007586 D7B24_007586 LTV1 LTV1 NOP14 NOP14 D7B24_009077 D7B24_009077 MRD1 MRD1 KRR1 KRR1 UTP13 UTP13 D7B24_008870 D7B24_008870 UTP5 UTP5 TSR3 TSR3 D7B24_009062 D7B24_009062 RPP40 RPP40 D7B24_009589 D7B24_009589 RPS28A_2 RPS28A_2 RPS14 RPS14 KRE33 KRE33 RPS7 RPS7 RPS13 RPS13 RPS27 RPS27 SGD1 SGD1 D7B24_000883 D7B24_000883 D7B24_000800 D7B24_000800 RRP5 RRP5 D7B24_002945 D7B24_002945 RPS16 RPS16 LSM7 LSM7 D7B24_003882 D7B24_003882 D7B24_002287 D7B24_002287 DIM1 DIM1 D7B24_003649 D7B24_003649 D7B24_003851 D7B24_003851 WDR3 WDR3 D7B24_003426 D7B24_003426 CSM1 CSM1 RRP9 RRP9 D7B24_005928 D7B24_005928 D7B24_005981 D7B24_005981 D7B24_003493 D7B24_003493 ENP1 ENP1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ROK1RNA-dependent ATPase rok1. (768 aa)
RPS5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
RPS1940S ribosomal protein S19. (152 aa)
RRP12Pre-rRNA processing protein. (1321 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1197 aa)
D7B24_007281Uncharacterized protein. (248 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
D7B24_007870Uncharacterized protein. (679 aa)
D7B24_005588Uncharacterized protein. (128 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
RIOK2Serine/threonine-protein kinase RIO2. (419 aa)
BFR2rRNA-processing protein bfr2. (594 aa)
KRI1KRRI-Interacting protein 1. (690 aa)
D7B24_007784Bms1-type G domain-containing protein. (820 aa)
D7B24_007869Uncharacterized protein. (429 aa)
D7B24_008809Uncharacterized protein. (815 aa)
D7B24_004809Uncharacterized protein. (206 aa)
RPS28A_140S ribosomal protein S28. (68 aa)
RPS8A40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
NOP58Nucleolar protein 58. (655 aa)
SOF1rRNA-processing protein sof1. (448 aa)
RSM19Mitochondrial ribosomal small subunit component; Belongs to the universal ribosomal protein uS19 family. (90 aa)
RPS15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (203 aa)
D7B24_004768Ribosomal_S7 domain-containing protein. (380 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
NOB1Nin1 binding protein. (472 aa)
UTP6U3 snoRNP protein. (416 aa)
BMS1Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
RPS2140S ribosomal protein S21. (87 aa)
D7B24_007780Uncharacterized protein. (735 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
D7B24_000703Uncharacterized protein. (1100 aa)
D7B24_007586BUD22 domain-containing protein. (496 aa)
LTV1Protein ltv1. (428 aa)
NOP14Nucleolar complex protein 14. (915 aa)
D7B24_009077Uncharacterized protein. (200 aa)
MRD1Multiple RNA-binding domain-containing protein 1. (866 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
D7B24_008870Fcf2 domain-containing protein. (197 aa)
UTP5Small subunit (SSU) processome component. (433 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (412 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
RPP40Ribonuclease P protein subunit p40. (338 aa)
D7B24_009589Uncharacterized protein. (876 aa)
RPS28A_240S ribosomal protein S28. (68 aa)
RPS14Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
KRE33RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
RPS13Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
RPS2740S ribosomal protein S27. (238 aa)
SGD1Suppressor of glycerol defect. (848 aa)
D7B24_000883PDCD2_C domain-containing protein. (431 aa)
D7B24_000800Sas10 domain-containing protein. (668 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
D7B24_002945Uncharacterized protein. (281 aa)
RPS1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
LSM7Sm-like protein lsm7. (141 aa)
D7B24_003882Uncharacterized protein. (229 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
D7B24_003649Uncharacterized protein. (900 aa)
D7B24_003851Uncharacterized protein. (604 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
D7B24_003426Uncharacterized protein. (940 aa)
CSM1Csm1-like protein. (249 aa)
RRP9Pre-rRNA processing protein. (606 aa)
D7B24_005928Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
D7B24_005981Uncharacterized protein. (402 aa)
D7B24_003493WD_REPEATS_REGION domain-containing protein. (634 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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