57 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	THO2	THO complex subunit 2. (2304 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	PCID2	PCI domain-containing protein 2. (452 aa)
	D7B24_007869	Uncharacterized protein. (429 aa)
	D7B24_007835	Uncharacterized protein. (356 aa)
	D7B24_007870	Uncharacterized protein. (679 aa)
	D7B24_007377	Uncharacterized protein. (352 aa)
	D7B24_008456	Uncharacterized protein. (536 aa)
	LOC1	60S ribosomal subunit assembly/export protein. (202 aa)
	RPB4	RNA polymerase B. (160 aa)
	THOC3	THO complex subunit 3. (339 aa)
	D7B24_006991	SAP domain-containing protein. (281 aa)
	D7B24_007833	Uncharacterized protein. (887 aa)
	GLE2	RNA export factor gle2. (358 aa)
	D7B24_006381	Uncharacterized protein. (107 aa)
	UPL1	E3 ubiquitin-protein ligase upl1. (4098 aa)
	D7B24_005647	RRM domain-containing protein. (256 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	D7B24_005609	Uncharacterized protein. (638 aa)
	D7B24_004675	RanBD1 domain-containing protein. (491 aa)
	D7B24_003785	Nup188_C domain-containing protein. (1826 aa)
	DHH1	DExD/H-box ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family. (531 aa)
	D7B24_003018	Uncharacterized protein. (601 aa)
	IWS1	Transcription factor iws1. (426 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_000703	Uncharacterized protein. (1100 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	NPL4	Nuclear protein localization protein 4. (683 aa)
	D7B24_003544	Uncharacterized protein. (519 aa)
	D7B24_005949	RRM domain-containing protein. (364 aa)
	MEX67	Nuclear mRNA export, poly(A)+RNA binding protein. (683 aa)
	D7B24_000135	Uncharacterized protein. (213 aa)
	NIC96	Nuclear pore complex subunit. (1179 aa)
	SUB2_2	Suppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1. (438 aa)
	D7B24_002789	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (1119 aa)
	SEC13	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family. (356 aa)
	D7B24_001965	Uncharacterized protein. (795 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	CBC2	Nuclear cap-binding protein subunit 2. (186 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_001390	Uncharacterized protein. (453 aa)
	D7B24_003153	Guanylate kinase-like domain-containing protein. (858 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	D7B24_001708	Uncharacterized protein. (92 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	D7B24_000837	Uncharacterized protein. (581 aa)
	DBP5	RNA helicase required for poly(A+) mRNA export. (485 aa)
	IPO5	Importin-5. (1096 aa)
	D7B24_000761	Uncharacterized protein. (1270 aa)
	D7B24_000773	FHA domain-containing protein. (315 aa)
	D7B24_000396	Uncharacterized protein. (729 aa)
	D7B24_001894	Uncharacterized protein. (888 aa)
	D7B24_000574	Uncharacterized protein. (1201 aa)
	PAB1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (767 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	DYN2	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (100 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBC2	D7B24_000135	A0A3M9XYW4	A0A3M9YQB9	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.717
CBC2	D7B24_000695	A0A3M9XYW4	A0A3M9YK93	Nuclear cap-binding protein subunit 2.	Nup54 domain-containing protein.	0.634
CBC2	D7B24_000773	A0A3M9XYW4	A0A3M9Y167	Nuclear cap-binding protein subunit 2.	FHA domain-containing protein.	0.651
CBC2	D7B24_000837	A0A3M9XYW4	A0A3M9Y0Y0	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.704
CBC2	D7B24_001181	A0A3M9XYW4	A0A3M9Y092	Nuclear cap-binding protein subunit 2.	Peptidase S59 domain-containing protein.	0.699
CBC2	D7B24_001534	A0A3M9XYW4	A0A3M9Y0Q2	Nuclear cap-binding protein subunit 2.	RanBD1 domain-containing protein.	0.996
CBC2	D7B24_001642	A0A3M9XYW4	A0A3M9XZ87	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.649
CBC2	D7B24_001965	A0A3M9XYW4	A0A3M9XYR2	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.999
CBC2	D7B24_003018	A0A3M9XYW4	A0A3M9YH76	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.839
CBC2	D7B24_003153	A0A3M9XYW4	A0A3M9XZS4	Nuclear cap-binding protein subunit 2.	Guanylate kinase-like domain-containing protein.	0.775
CBC2	D7B24_004675	A0A3M9XYW4	A0A3M9YF52	Nuclear cap-binding protein subunit 2.	RanBD1 domain-containing protein.	0.627
CBC2	D7B24_005647	A0A3M9XYW4	A0A3M9YD42	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.922
CBC2	D7B24_005906	A0A3M9XYW4	A0A3M9YJL2	Nuclear cap-binding protein subunit 2.	NUP214 domain-containing protein.	0.658
CBC2	D7B24_005949	A0A3M9XYW4	A0A3M9YMI4	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.922
CBC2	D7B24_006381	A0A3M9XYW4	A0A3M9YBG3	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.654
CBC2	D7B24_006991	A0A3M9XYW4	A0A3M9Y9U9	Nuclear cap-binding protein subunit 2.	SAP domain-containing protein.	0.654
CBC2	D7B24_007377	A0A3M9XYW4	A0A3M9Y8I5	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.670
CBC2	D7B24_008513	A0A3M9XYW4	A0A3M9Y5M6	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.649
CBC2	D7B24_009095	A0A3M9XYW4	A0A3M9Y3W8	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.770
CBC2	D7B24_009383	A0A3M9XYW4	A0A3M9Y3W9	Nuclear cap-binding protein subunit 2.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.639