52 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	XPO1	Exportin-1. (1078 aa)
	RPS3	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	D7B24_007870	Uncharacterized protein. (679 aa)
	D7B24_007377	Uncharacterized protein. (352 aa)
	D7B24_008456	Uncharacterized protein. (536 aa)
	D7B24_007872	CP-type G domain-containing protein. (643 aa)
	RPB4	RNA polymerase B. (160 aa)
	THOC3	THO complex subunit 3. (339 aa)
	D7B24_006991	SAP domain-containing protein. (281 aa)
	GLE2	RNA export factor gle2. (358 aa)
	RPS5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	D7B24_006381	Uncharacterized protein. (107 aa)
	D7B24_007230	Uncharacterized protein. (449 aa)
	D7B24_005647	RRM domain-containing protein. (256 aa)
	LOS1	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1011 aa)
	ARB1	ABC transporter ATP-binding protein arb1. (632 aa)
	D7B24_005113	Protein kinase domain-containing protein. (772 aa)
	D7B24_001870	Uncharacterized protein. (852 aa)
	YRB1	Ran GTPase-binding protein yrb1. (257 aa)
	D7B24_003018	Uncharacterized protein. (601 aa)
	D7B24_002446	J domain-containing protein. (444 aa)
	IWS1	Transcription factor iws1. (426 aa)
	D7B24_000703	Uncharacterized protein. (1100 aa)
	D7B24_003544	Uncharacterized protein. (519 aa)
	D7B24_005928	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (196 aa)
	MEX67	Nuclear mRNA export, poly(A)+RNA binding protein. (683 aa)
	D7B24_000135	Uncharacterized protein. (213 aa)
	D7B24_004067	Importin N-terminal domain-containing protein. (1636 aa)
	GNL3	Guanine nucleotide-binding protein-like 3. (545 aa)
	RLI1	Fe-S cluster-binding ribosome biosynthesis protein. (607 aa)
	SDAD1	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (751 aa)
	D7B24_001965	Uncharacterized protein. (795 aa)
	D7B24_001573	Uncharacterized protein. (784 aa)
	D7B24_003153	Guanylate kinase-like domain-containing protein. (858 aa)
	GTPBP4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (658 aa)
	D7B24_001708	Uncharacterized protein. (92 aa)
	D7B24_002945	Uncharacterized protein. (281 aa)
	D7B24_000837	Uncharacterized protein. (581 aa)
	DNAJC21	DnaJ sub C member 21. (560 aa)
	IPO5	Importin-5. (1096 aa)
	D7B24_000773	FHA domain-containing protein. (315 aa)
	CSE1L	Exportin-2. (958 aa)
	D7B24_001894	Uncharacterized protein. (888 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	NOL6	U3 small nucleolar RNA-associated protein 22. (1102 aa)
	THO2	THO complex subunit 2. (2304 aa)
	NOG2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (609 aa)
	PCID2	PCI domain-containing protein 2. (452 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
	LTV1	Protein ltv1. (428 aa)
	GSP1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	D7B24_007869	Uncharacterized protein. (429 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARB1	D7B24_000703	A0A3M9YED7	A0A3M9YJL3	ABC transporter ATP-binding protein arb1.	Uncharacterized protein.	0.794
ARB1	D7B24_007872	A0A3M9YED7	A0A3M9Y8Z5	ABC transporter ATP-binding protein arb1.	CP-type G domain-containing protein.	0.541
ARB1	GNL3	A0A3M9YED7	A0A3M9XVR1	ABC transporter ATP-binding protein arb1.	Guanine nucleotide-binding protein-like 3.	0.617
ARB1	NOG2	A0A3M9YED7	A0A3M9Y5N0	ABC transporter ATP-binding protein arb1.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.460
ARB1	NOL6	A0A3M9YED7	A0A3M9Y462	ABC transporter ATP-binding protein arb1.	U3 small nucleolar RNA-associated protein 22.	0.612
ARB1	RLI1	A0A3M9YED7	A0A3M9XY13	ABC transporter ATP-binding protein arb1.	Fe-S cluster-binding ribosome biosynthesis protein.	0.928
ARB1	RPS3	A0A3M9YED7	A0A3M9Y828	ABC transporter ATP-binding protein arb1.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.770
ARB1	RPS5	A0A3M9YED7	A0A3M9YB84	ABC transporter ATP-binding protein arb1.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.571
ARB1	TIF6	A0A3M9YED7	A0A3M9Y5U7	ABC transporter ATP-binding protein arb1.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.764
CSE1L	D7B24_000703	A0A3M9Y1V8	A0A3M9YJL3	Exportin-2.	Uncharacterized protein.	0.444
CSE1L	D7B24_001870	A0A3M9Y1V8	A0A3M9YGI5	Exportin-2.	Uncharacterized protein.	0.553
CSE1L	D7B24_004067	A0A3M9Y1V8	A0A3M9XVE1	Exportin-2.	Importin N-terminal domain-containing protein.	0.642
CSE1L	GSP1	A0A3M9Y1V8	A0A3M9Y6P3	Exportin-2.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.914
CSE1L	IPO5	A0A3M9Y1V8	A0A3M9Y123	Exportin-2.	Importin-5.	0.607
CSE1L	LOS1	A0A3M9Y1V8	A0A3M9YDH5	Exportin-2.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.586
CSE1L	RLI1	A0A3M9Y1V8	A0A3M9XY13	Exportin-2.	Fe-S cluster-binding ribosome biosynthesis protein.	0.600
CSE1L	XPO1	A0A3M9Y1V8	A0A3M9Y788	Exportin-2.	Exportin-1.	0.772
CSE1L	YRB1	A0A3M9Y1V8	A0A3M9YH35	Exportin-2.	Ran GTPase-binding protein yrb1.	0.553
D7B24_000135	D7B24_001965	A0A3M9YQB9	A0A3M9XYR2	Uncharacterized protein.	Uncharacterized protein.	0.850
D7B24_000135	D7B24_003018	A0A3M9YQB9	A0A3M9YH76	Uncharacterized protein.	Uncharacterized protein.	0.487