6 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_007226	Uncharacterized protein. (199 aa)
	D7B24_005336	Uncharacterized protein. (118 aa)
	D7B24_002060	Uncharacterized protein. (93 aa)
	D7B24_001082	Uncharacterized protein. (176 aa)
	D7B24_003762	zf-CHCC domain-containing protein. (168 aa)
	D7B24_008231	Uncharacterized protein. (172 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_001082	D7B24_002060	A0A3M9YHI2	A0A3M9XZK9	Uncharacterized protein.	Uncharacterized protein.	0.887
D7B24_001082	D7B24_003762	A0A3M9YHI2	A0A3M9YG87	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.999
D7B24_001082	D7B24_005336	A0A3M9YHI2	A0A3M9YC37	Uncharacterized protein.	Uncharacterized protein.	0.999
D7B24_001082	D7B24_007226	A0A3M9YHI2	A0A3M9Y9Q5	Uncharacterized protein.	Uncharacterized protein.	0.999
D7B24_001082	D7B24_008231	A0A3M9YHI2	A0A3M9Y7H8	Uncharacterized protein.	Uncharacterized protein.	0.977
D7B24_002060	D7B24_001082	A0A3M9XZK9	A0A3M9YHI2	Uncharacterized protein.	Uncharacterized protein.	0.887
D7B24_002060	D7B24_003762	A0A3M9XZK9	A0A3M9YG87	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.933
D7B24_002060	D7B24_005336	A0A3M9XZK9	A0A3M9YC37	Uncharacterized protein.	Uncharacterized protein.	0.877
D7B24_002060	D7B24_007226	A0A3M9XZK9	A0A3M9Y9Q5	Uncharacterized protein.	Uncharacterized protein.	0.920
D7B24_002060	D7B24_008231	A0A3M9XZK9	A0A3M9Y7H8	Uncharacterized protein.	Uncharacterized protein.	0.855
D7B24_003762	D7B24_001082	A0A3M9YG87	A0A3M9YHI2	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.999
D7B24_003762	D7B24_002060	A0A3M9YG87	A0A3M9XZK9	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.933
D7B24_003762	D7B24_005336	A0A3M9YG87	A0A3M9YC37	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.999
D7B24_003762	D7B24_007226	A0A3M9YG87	A0A3M9Y9Q5	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.999
D7B24_003762	D7B24_008231	A0A3M9YG87	A0A3M9Y7H8	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.983
D7B24_005336	D7B24_001082	A0A3M9YC37	A0A3M9YHI2	Uncharacterized protein.	Uncharacterized protein.	0.999
D7B24_005336	D7B24_002060	A0A3M9YC37	A0A3M9XZK9	Uncharacterized protein.	Uncharacterized protein.	0.877
D7B24_005336	D7B24_003762	A0A3M9YC37	A0A3M9YG87	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.999
D7B24_005336	D7B24_007226	A0A3M9YC37	A0A3M9Y9Q5	Uncharacterized protein.	Uncharacterized protein.	0.998
D7B24_005336	D7B24_008231	A0A3M9YC37	A0A3M9Y7H8	Uncharacterized protein.	Uncharacterized protein.	0.967