127 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_009315	Uncharacterized protein. (171 aa)
	RPL24	60S ribosomal protein L24. (175 aa)
	D7B24_003561	Uncharacterized protein. (387 aa)
	RPL36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	RPL37A	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	D7B24_009262	Uncharacterized protein. (236 aa)
	RPP2B	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	D7B24_005987	Sod_Fe_C domain-containing protein. (303 aa)
	MRPL24	39S ribosomal protein L24, mitochondrial. (281 aa)
	D7B24_005060	Ribosomal_L14e domain-containing protein. (147 aa)
	D7B24_000021	Uncharacterized protein. (210 aa)
	RPS26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	D7B24_004992	Uncharacterized protein. (160 aa)
	D7B24_003496	Uncharacterized protein. (99 aa)
	RPS9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	RSM23	37S ribosomal protein S23 mitochondrial. (477 aa)
	MRPL10	YmL10. (321 aa)
	RPS21	40S ribosomal protein S21. (87 aa)
	RPL32	60S ribosomal protein L32. (131 aa)
	RPL11	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	MRPL33	39S ribosomal protein L33, mitochondrial; Belongs to the universal ribosomal protein uL30 family. (86 aa)
	D7B24_002425	Uncharacterized protein. (320 aa)
	D7B24_004429	Uncharacterized protein. (132 aa)
	D7B24_001780	Uncharacterized protein. (116 aa)
	D7B24_002679	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	D7B24_004600	Uncharacterized protein. (176 aa)
	MRPL23	54S ribosomal protein L23, mitochondrial. (179 aa)
	D7B24_005532	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (128 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
	RPS6	40S ribosomal protein S6. (257 aa)
	D7B24_004513	Uncharacterized protein. (319 aa)
	D7B24_004768	Ribosomal_S7 domain-containing protein. (380 aa)
	RPS15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (203 aa)
	RSM19	Mitochondrial ribosomal small subunit component; Belongs to the universal ribosomal protein uS19 family. (90 aa)
	D7B24_004557	Uncharacterized protein. (164 aa)
	D7B24_006163	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (110 aa)
	D7B24_004807	Uncharacterized protein. (105 aa)
	D7B24_005720	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	RPS8A	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
	RPS28A_1	40S ribosomal protein S28. (68 aa)
	RPS25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (93 aa)
	D7B24_005673	Uncharacterized protein. (389 aa)
	D7B24_005588	Uncharacterized protein. (128 aa)
	D7B24_006414	Uncharacterized protein. (135 aa)
	RPL28	60S ribosomal protein L28; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	MRPS5	28S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family. (494 aa)
	D7B24_006058	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
	MRPL16	Mitochondrial ribosomal large subunit component; Belongs to the universal ribosomal protein uL16 family. (250 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (214 aa)
	RPS19	40S ribosomal protein S19. (152 aa)
	D7B24_006350	Ribosomal_L2_C domain-containing protein. (392 aa)
	D7B24_005721	Uncharacterized protein. (303 aa)
	RSM27	Mitochondral 37S ribosomal protein S27. (104 aa)
	RPL5	60S ribosomal protein L5. (299 aa)
	D7B24_007779	L51_S25_CI-B8 domain-containing protein. (199 aa)
	RPL30	60S ribosomal protein L30. (110 aa)
	RPL16B	60S ribosomal protein L16B; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	RPS17	40S ribosomal protein S17. (148 aa)
	D7B24_007872	CP-type G domain-containing protein. (643 aa)
	MRPL11	54S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family. (152 aa)
	RPL10A	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	D7B24_007008	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (63 aa)
	D7B24_008005	Uncharacterized protein. (162 aa)
	D7B24_007281	Uncharacterized protein. (248 aa)
	D7B24_006982	Uncharacterized protein. (185 aa)
	D7B24_006963	Uncharacterized protein. (535 aa)
	RPL39	60S ribosomal protein L39. (51 aa)
	D7B24_007340	Uncharacterized protein. (275 aa)
	RPL29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (63 aa)
	MRPS9	37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family. (336 aa)
	RPL20	60S ribosomal protein L20. (174 aa)
	D7B24_009111	Ribos_L4_asso_C domain-containing protein. (352 aa)
	RPL34	60S ribosomal protein L34. (116 aa)
	RPL26A	60S ribosomal protein L26A. (136 aa)
	D7B24_007968	Uncharacterized protein. (186 aa)
	D7B24_007783	cobW domain-containing protein. (273 aa)
	MRPL22	54S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family. (371 aa)
	RSM24	37S ribosomal protein S24, mitochondrial. (381 aa)
	D7B24_007727	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (203 aa)
	RSM10	Mitochondrial 37S ribosomal protein rsm10. (239 aa)
	D7B24_008333	Ribosomal_L18e/L15P domain-containing protein. (195 aa)
	D7B24_008795	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (64 aa)
	D7B24_008613	Ribosomal_L28e domain-containing protein. (158 aa)
	D7B24_009112	Uncharacterized protein. (910 aa)
	RPL31	60S ribosomal protein L31. (154 aa)
	RPP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	D7B24_009607	Uncharacterized protein. (207 aa)
	RPL12	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	RPS2	40S ribosomal protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	D7B24_009456	Uncharacterized protein. (479 aa)
	RPL22	60S ribosomal protein L22. (126 aa)
	RPS28A_2	40S ribosomal protein S28. (68 aa)
	RPL25	60S ribosomal protein L25. (157 aa)
	RPS14	Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	GCS1	Zn finger-containing GTPase-Activating Protein for ARF. (374 aa)
	RSM25	Mitochondrial ribosomal small subunit component. (283 aa)
	YML6	54S ribosomal protein, mitochondrial. (320 aa)
	MRPL9	54S ribosomal protein L9, mitochondrial. (337 aa)
	RPS7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	D7B24_002065	Uncharacterized protein. (332 aa)
	D7B24_001031	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (119 aa)
	RPS27	40S ribosomal protein S27. (238 aa)
	D7B24_001017	IGR domain-containing protein. (225 aa)
	RPL9B	60S ribosomal protein L9B. (193 aa)
	RPL2A	60S ribosomal protein L2A. (254 aa)
	D7B24_002355	Ribosomal_L5_C domain-containing protein. (356 aa)
	D7B24_002876	BZIP domain-containing protein. (276 aa)
	D7B24_002061	RNase III domain-containing protein. (413 aa)
	RPS16	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	MRPL44	39S ribosomal protein L44, mitochondrial. (98 aa)
	RPL35	60S ribosomal protein L35. (125 aa)
	MRPL43	39S ribosomal protein L43, mitochondrial. (137 aa)
	MRPL4	54S ribosomal protein L4 mitochondrial. (271 aa)
	RPL15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (337 aa)
	MRP2_2	40S ribosomal protein mrp2, mitochondrial. (113 aa)
	D7B24_002292	S4 RNA-binding domain-containing protein. (211 aa)
	D7B24_002933	Uncharacterized protein. (140 aa)
	RPL35B	60S ribosomal protein L35B. (109 aa)
	D7B24_002561	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (249 aa)
	D7B24_002601	Uncharacterized protein. (239 aa)
	PPE1	Protein with carboxyl methyl esterase activity. (415 aa)
	RPS29	40S ribosomal protein S29. (56 aa)
	RPL38	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (80 aa)
	D7B24_004034	S10_plectin domain-containing protein. (167 aa)
	D7B24_003697	FAD-binding PCMH-type domain-containing protein. (610 aa)
	D7B24_003853	eIF2A domain-containing protein. (718 aa)
	MRP4	37S ribosomal protein, mitochondrial. (396 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000021	D7B24_001017	A0A3M9YL52	A0A3M9Y1R6	Uncharacterized protein.	IGR domain-containing protein.	0.533
D7B24_000021	D7B24_001031	A0A3M9YL52	A0A3M9Y293	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.889
D7B24_000021	D7B24_001780	A0A3M9YL52	A0A3M9YHF2	Uncharacterized protein.	Uncharacterized protein.	0.651
D7B24_000021	D7B24_002061	A0A3M9YL52	A0A3M9Y077	Uncharacterized protein.	RNase III domain-containing protein.	0.882
D7B24_000021	D7B24_002065	A0A3M9YL52	A0A3M9Y2E0	Uncharacterized protein.	Uncharacterized protein.	0.851
D7B24_000021	D7B24_002292	A0A3M9YL52	A0A3M9XXZ5	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.851
D7B24_000021	D7B24_002355	A0A3M9YL52	A0A3M9Y118	Uncharacterized protein.	Ribosomal_L5_C domain-containing protein.	0.919
D7B24_000021	D7B24_002425	A0A3M9YL52	A0A3M9YHN5	Uncharacterized protein.	Uncharacterized protein.	0.882
D7B24_000021	D7B24_002561	A0A3M9YL52	A0A3M9XXK3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.906
D7B24_000021	D7B24_002601	A0A3M9YL52	A0A3M9XXG6	Uncharacterized protein.	Uncharacterized protein.	0.932
D7B24_000021	D7B24_002876	A0A3M9YL52	A0A3M9Y0Y3	Uncharacterized protein.	BZIP domain-containing protein.	0.418
D7B24_000021	D7B24_002933	A0A3M9YL52	A0A3M9XXW1	Uncharacterized protein.	Uncharacterized protein.	0.914
D7B24_000021	D7B24_003496	A0A3M9YL52	A0A3M9YKG2	Uncharacterized protein.	Uncharacterized protein.	0.898
D7B24_000021	D7B24_003697	A0A3M9YL52	A0A3M9XVW2	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.473
D7B24_000021	D7B24_004429	A0A3M9YL52	A0A3M9YHH4	Uncharacterized protein.	Uncharacterized protein.	0.586
D7B24_000021	D7B24_004513	A0A3M9YL52	A0A3M9YEY6	Uncharacterized protein.	Uncharacterized protein.	0.910
D7B24_000021	D7B24_004557	A0A3M9YL52	A0A3M9YE91	Uncharacterized protein.	Uncharacterized protein.	0.898
D7B24_000021	D7B24_004600	A0A3M9YL52	A0A3M9YG22	Uncharacterized protein.	Uncharacterized protein.	0.885
D7B24_000021	D7B24_004768	A0A3M9YL52	A0A3M9YEW0	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.884
D7B24_000021	D7B24_004807	A0A3M9YL52	A0A3M9YDX0	Uncharacterized protein.	Uncharacterized protein.	0.877