4 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_002516	Uncharacterized protein. (518 aa)
	D7B24_009348	Uncharacterized protein. (1060 aa)
	D7B24_008397	Cytochrome b5 heme-binding domain-containing protein. (621 aa)
	D7B24_004673	Uncharacterized protein. (910 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_002516	D7B24_004673	A0A3M9XZG0	A0A3M9YDD1	Uncharacterized protein.	Uncharacterized protein.	0.898
D7B24_002516	D7B24_008397	A0A3M9XZG0	A0A3M9Y5G4	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.930
D7B24_002516	D7B24_009348	A0A3M9XZG0	A0A3M9Y322	Uncharacterized protein.	Uncharacterized protein.	0.898
D7B24_004673	D7B24_002516	A0A3M9YDD1	A0A3M9XZG0	Uncharacterized protein.	Uncharacterized protein.	0.898
D7B24_004673	D7B24_008397	A0A3M9YDD1	A0A3M9Y5G4	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.898
D7B24_004673	D7B24_009348	A0A3M9YDD1	A0A3M9Y322	Uncharacterized protein.	Uncharacterized protein.	0.982
D7B24_008397	D7B24_002516	A0A3M9Y5G4	A0A3M9XZG0	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.930
D7B24_008397	D7B24_004673	A0A3M9Y5G4	A0A3M9YDD1	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.898
D7B24_008397	D7B24_009348	A0A3M9Y5G4	A0A3M9Y322	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.898
D7B24_009348	D7B24_002516	A0A3M9Y322	A0A3M9XZG0	Uncharacterized protein.	Uncharacterized protein.	0.898
D7B24_009348	D7B24_004673	A0A3M9Y322	A0A3M9YDD1	Uncharacterized protein.	Uncharacterized protein.	0.982
D7B24_009348	D7B24_008397	A0A3M9Y322	A0A3M9Y5G4	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.898