55 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPT6	26S proteasome regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)
	D7B24_000850	Uncharacterized protein. (153 aa)
	D7B24_000881	DNA ligase. (860 aa)
	D7B24_001233	Uncharacterized protein. (443 aa)
	RPL2A	60S ribosomal protein L2A. (254 aa)
	D7B24_001348	Zf-primase domain-containing protein. (775 aa)
	RRP5	rRNA bioproteinsis protein rrp5. (1809 aa)
	RRP40	Exosome non-catalytic core subunit rrp40. (245 aa)
	TIF51	Eukaryotic translation initiation factor 5A. (161 aa)
	DIS3	Exosome catalytic subunit dis3; Belongs to the RNR ribonuclease family. (984 aa)
	MCM5	DNA helicase; Belongs to the MCM family. (721 aa)
	D7B24_004072	Uncharacterized protein. (373 aa)
	D7B24_009017	RNB domain-containing protein. (994 aa)
	RPT5	26S proteasome regulatory subunit 6A; Belongs to the AAA ATPase family. (463 aa)
	RFA1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (617 aa)
	D7B24_009582	Uncharacterized protein. (958 aa)
	D7B24_008311	DNA ligase. (893 aa)
	D7B24_008305	AA_TRNA_LIGASE_II domain-containing protein. (588 aa)
	MCM3	DNA helicase; Belongs to the MCM family. (884 aa)
	RIM1	SsDNA-binding protein, mitochondrial. (138 aa)
	RFA2	Replication factor A protein 2. (290 aa)
	MCM6	DNA helicase; Belongs to the MCM family. (953 aa)
	D7B24_007007	AA_TRNA_LIGASE_II domain-containing protein. (591 aa)
	MCM4	DNA helicase; Belongs to the MCM family. (1028 aa)
	MCM2	DNA helicase; Belongs to the MCM family. (914 aa)
	D7B24_006350	Ribosomal_L2_C domain-containing protein. (392 aa)
	RPT2	ATPase of 26S proteasome regulatory subunit 4; Belongs to the AAA ATPase family. (459 aa)
	D7B24_005377	AA_TRNA_LIGASE_II domain-containing protein. (889 aa)
	TIF11	Translation initiation factor 1A; Belongs to the eIF-1A family. (194 aa)
	TRM2	tRNA(M5U54)methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (559 aa)
	RPB8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	RPS28A_1	40S ribosomal protein S28. (68 aa)
	SLM5	Asparaginyl-tRNA synthetase. (564 aa)
	D7B24_005720	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	D7B24_000960	S1 motif domain-containing protein. (313 aa)
	CEG1	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (397 aa)
	D7B24_004594	S1-like domain-containing protein. (136 aa)
	D7B24_004600	Uncharacterized protein. (176 aa)
	LIG4	DNA ligase. (1008 aa)
	RPT3	26S proteasome regulatory subunit 6B; Belongs to the AAA ATPase family. (421 aa)
	D7B24_007408	Telo_bind domain-containing protein. (1575 aa)
	RPB7	DNA-directed RNA polymerase II subunit. (177 aa)
	KRS1	Lysine--tRNA ligase. (620 aa)
	RPC25	DNA-directed RNA polymerase III subunit rpc25. (195 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (838 aa)
	D7B24_003429	Stn1 domain-containing protein. (323 aa)
	RPS23	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (141 aa)
	RPT4	26S proteasome subunit rpt4; Belongs to the AAA ATPase family. (373 aa)
	CSL4	Exosome 3'->5 exonuclease subunit ski4 (Csl4). (211 aa)
	RRP4	Exosome non-catalytic core subunit rrp4. (353 aa)
	D7B24_008953	AA_TRNA_LIGASE_II domain-containing protein. (588 aa)
	SPT6	Transcription elongation factor spt6. (1416 aa)
	D7B24_009094	RNB domain-containing protein. (1359 aa)
	D7B24_009453	Uncharacterized protein. (109 aa)
	RPS28A_2	40S ribosomal protein S28. (68 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEG1	RPB7	A0A3M9YEX0	A0A3M9YJY2	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	DNA-directed RNA polymerase II subunit.	0.742
CEG1	RPB8	A0A3M9YEX0	A0A3M9YCP0	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.640
CSL4	D7B24_005720	A0A3M9Y4P7	A0A3M9YDI0	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.414
CSL4	D7B24_009017	A0A3M9Y4P7	A0A3M9Y4Z3	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	RNB domain-containing protein.	0.871
CSL4	D7B24_009094	A0A3M9Y4P7	A0A3M9Y3D5	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	RNB domain-containing protein.	0.929
CSL4	DIS3	A0A3M9Y4P7	A0A3M9XX36	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome catalytic subunit dis3; Belongs to the RNR ribonuclease family.	0.966
CSL4	RPB8	A0A3M9Y4P7	A0A3M9YCP0	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.473
CSL4	RPS23	A0A3M9Y4P7	A0A3M9YNF5	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.442
CSL4	RRP4	A0A3M9Y4P7	A0A3M9Y4M6	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome non-catalytic core subunit rrp4.	0.985
CSL4	RRP40	A0A3M9Y4P7	A0A3M9XXM2	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	Exosome non-catalytic core subunit rrp40.	0.988
CSL4	RRP5	A0A3M9Y4P7	A0A3M9Y108	Exosome 3'->5 exonuclease subunit ski4 (Csl4).	rRNA bioproteinsis protein rrp5.	0.805
D7B24_000850	D7B24_000960	A0A3M9Y2A7	A0A3M9Y2C0	Uncharacterized protein.	S1 motif domain-containing protein.	0.952
D7B24_000850	D7B24_001233	A0A3M9Y2A7	A0A3M9Y1W6	Uncharacterized protein.	Uncharacterized protein.	0.914
D7B24_000850	D7B24_004594	A0A3M9Y2A7	A0A3M9YF33	Uncharacterized protein.	S1-like domain-containing protein.	0.474
D7B24_000850	D7B24_004600	A0A3M9Y2A7	A0A3M9YG22	Uncharacterized protein.	Uncharacterized protein.	0.998
D7B24_000850	D7B24_006350	A0A3M9Y2A7	A0A3M9YB38	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.995
D7B24_000850	D7B24_008953	A0A3M9Y2A7	A0A3M9Y4F4	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.439
D7B24_000850	KRS1	A0A3M9Y2A7	A0A3M9YK87	Uncharacterized protein.	Lysine--tRNA ligase.	0.439
D7B24_000850	RPL2A	A0A3M9Y2A7	A0A3M9Y156	Uncharacterized protein.	60S ribosomal protein L2A.	0.945
D7B24_000850	RPS23	A0A3M9Y2A7	A0A3M9YNF5	Uncharacterized protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.977