STRINGSTRING
HIR1 HIR1 D7B24_000607 D7B24_000607 D7B24_002082 D7B24_002082 D7B24_002269 D7B24_002269 D7B24_000396 D7B24_000396 YTM1 YTM1 D7B24_000959 D7B24_000959 WDR4 WDR4 D7B24_001418 D7B24_001418 D7B24_000886 D7B24_000886 CDC20 CDC20 D7B24_001952 D7B24_001952 D7B24_002109 D7B24_002109 D7B24_003377 D7B24_003377 D7B24_002287 D7B24_002287 CEL74A CEL74A ELP2 ELP2 NLE1 NLE1 ERB1 ERB1 D7B24_002580 D7B24_002580 SKI8 SKI8 SCON2 SCON2 SEC13 SEC13 D7B24_002908 D7B24_002908 D7B24_002405 D7B24_002405 D7B24_002395 D7B24_002395 PEX7 PEX7 PAK1IP1 PAK1IP1 D7B24_002916 D7B24_002916 TUP1 TUP1 D7B24_003840 D7B24_003840 D7B24_003853 D7B24_003853 SEC31 SEC31 D7B24_004067 D7B24_004067 WDR89 WDR89 D7B24_004548 D7B24_004548 RBBP5 RBBP5 D7B24_000063 D7B24_000063 D7B24_003493 D7B24_003493 D7B24_006002 D7B24_006002 CPSF1 CPSF1 RRP9 RRP9 D7B24_007492 D7B24_007492 D7B24_007482 D7B24_007482 WDR45L WDR45L D7B24_000165 D7B24_000165 SWD3 SWD3 D7B24_006803 D7B24_006803 PRT1 PRT1 WDR3 WDR3 VPS10 VPS10 D7B24_000128 D7B24_000128 D7B24_009239 D7B24_009239 HAT2 HAT2 D7B24_000076 D7B24_000076 D7B24_008117 D7B24_008117 RTC1 RTC1 D7B24_007454 D7B24_007454 WDR26 WDR26 D7B24_005037 D7B24_005037 D7B24_003486 D7B24_003486 D7B24_002476 D7B24_002476 D7B24_005940 D7B24_005940 D7B24_005906 D7B24_005906 WDR44 WDR44 D7B24_009247 D7B24_009247 D7B24_000698 D7B24_000698 D7B24_001849 D7B24_001849 RRB1 RRB1 D7B24_002451 D7B24_002451 D7B24_009234 D7B24_009234 GPB1 GPB1 D7B24_002151 D7B24_002151 D7B24_001862 D7B24_001862 D7B24_001842 D7B24_001842 IRE1 IRE1 D7B24_002477 D7B24_002477 D7B24_001494 D7B24_001494 SPT8 SPT8 D7B24_003752 D7B24_003752 D7B24_002172 D7B24_002172 SERAC1_2 SERAC1_2 D7B24_005512 D7B24_005512 D7B24_004504 D7B24_004504 VPS41 VPS41 D7B24_004731 D7B24_004731 D7B24_004711 D7B24_004711 SOF1 SOF1 D7B24_004953 D7B24_004953 D7B24_005838 D7B24_005838 D7B24_004724 D7B24_004724 D7B24_005469 D7B24_005469 D7B24_004797 D7B24_004797 VPS15 VPS15 D7B24_004500 D7B24_004500 SEH1 SEH1 D7B24_005332 D7B24_005332 D7B24_005804 D7B24_005804 D7B24_005618 D7B24_005618 CDC55 CDC55 D7B24_006346 D7B24_006346 LST8 LST8 D7B24_005617 D7B24_005617 D7B24_005637 D7B24_005637 VPS8 VPS8 D7B24_006388 D7B24_006388 D7B24_005709 D7B24_005709 WDR33 WDR33 D7B24_006380 D7B24_006380 TAF5 TAF5 MDV1 MDV1 GLE2 GLE2 D7B24_006106 D7B24_006106 CDC4 CDC4 PRP46 PRP46 D7B24_007006 D7B24_007006 THOC3 THOC3 RSE1 RSE1 AIP1 AIP1 GNB2L1 GNB2L1 D7B24_006839 D7B24_006839 WDR36 WDR36 D7B24_007691 D7B24_007691 UTP7 UTP7 UTP4 UTP4 SWD2 SWD2 ATG18 ATG18 PAN2 PAN2 D7B24_007269 D7B24_007269 D7B24_008298 D7B24_008298 TIF34 TIF34 CIAO1 CIAO1 D7B24_008964 D7B24_008964 JIP5 JIP5 FBXW7 FBXW7 D7B24_008513 D7B24_008513 D7B24_007990 D7B24_007990 D7B24_008197 D7B24_008197 ASA1 ASA1 UTP13 UTP13 D7B24_000379 D7B24_000379 D7B24_009062 D7B24_009062 CDH1 CDH1 D7B24_001313 D7B24_001313 D7B24_009626 D7B24_009626 WDR6 WDR6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HIR1Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1056 aa)
D7B24_000607Uncharacterized protein. (399 aa)
D7B24_002082RING-type domain-containing protein. (1074 aa)
D7B24_002269WD_REPEATS_REGION domain-containing protein. (356 aa)
D7B24_000396Uncharacterized protein. (729 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
D7B24_000959Uncharacterized protein. (356 aa)
WDR4tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family. (564 aa)
D7B24_001418Uncharacterized protein. (826 aa)
D7B24_000886Uncharacterized protein. (816 aa)
CDC20Ubiquitin-protein transferase activating protein. (601 aa)
D7B24_001952WD_REPEATS_REGION domain-containing protein. (372 aa)
D7B24_002109Uncharacterized protein. (628 aa)
D7B24_003377Uncharacterized protein. (1083 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
CEL74AXyloglucanase. (734 aa)
ELP2Elongator subunit elp2. (828 aa)
NLE1Notchless protein 1. (515 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
D7B24_002580Uncharacterized protein. (1315 aa)
SKI8Superkiller. (317 aa)
SCON2E3 ubiquitin ligase complex SCF subunit scon-2. (646 aa)
SEC13GTPase-activating protein S13; Belongs to the WD repeat SEC13 family. (356 aa)
D7B24_002908Uncharacterized protein. (749 aa)
D7B24_002405WD_REPEATS_REGION domain-containing protein. (468 aa)
D7B24_002395Uncharacterized protein. (2613 aa)
PEX7Peroxisomal targeting signal 2 receptor. (343 aa)
PAK1IP1P21-activated protein kinase-interacting protein 1-like protein. (494 aa)
D7B24_002916Uncharacterized protein. (1129 aa)
TUP1Proteinral transcription repressor. (626 aa)
D7B24_003840Uncharacterized protein. (931 aa)
D7B24_003853eIF2A domain-containing protein. (718 aa)
SEC31Protein transport protein S31. (1264 aa)
D7B24_004067Importin N-terminal domain-containing protein. (1636 aa)
WDR89WD repeat-containing protein 89. (337 aa)
D7B24_004548WD_REPEATS_REGION domain-containing protein. (228 aa)
RBBP5Retinoblastoma-binding protein 5. (477 aa)
D7B24_000063WD_REPEATS_REGION domain-containing protein. (535 aa)
D7B24_003493WD_REPEATS_REGION domain-containing protein. (634 aa)
D7B24_006002WD_REPEATS_REGION domain-containing protein. (598 aa)
CPSF1Cleavage and polyadenylation specificity factor subunit 1. (1451 aa)
RRP9Pre-rRNA processing protein. (606 aa)
D7B24_007492Uncharacterized protein. (523 aa)
D7B24_007482WD_REPEATS_REGION domain-containing protein. (1032 aa)
WDR45LWD repeat domain phosphoinositide-interacting protein 3. (377 aa)
D7B24_000165WD_REPEATS_REGION domain-containing protein. (701 aa)
SWD3WD domain protein. (569 aa)
D7B24_006803Uncharacterized protein. (1377 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (745 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
VPS10Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. (1510 aa)
D7B24_000128E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2902 aa)
D7B24_009239Uncharacterized protein. (475 aa)
HAT2Histone acetyltransferase type B subunit 2. (436 aa)
D7B24_000076Uncharacterized protein. (692 aa)
D7B24_008117WD_REPEATS_REGION domain-containing protein. (982 aa)
RTC1SEA (Seh1-associated) complex subunit. (1316 aa)
D7B24_007454IPPc domain-containing protein. (1167 aa)
WDR26WD repeat-containing protein 26. (476 aa)
D7B24_005037WD_REPEATS_REGION domain-containing protein. (650 aa)
D7B24_003486WD_REPEATS_REGION domain-containing protein. (639 aa)
D7B24_002476Uncharacterized protein. (357 aa)
D7B24_005940WD_REPEATS_REGION domain-containing protein. (1536 aa)
D7B24_005906NUP214 domain-containing protein. (1606 aa)
WDR44WD repeat-containing protein 44. (1051 aa)
D7B24_009247WD_REPEATS_REGION domain-containing protein. (853 aa)
D7B24_000698WD_REPEATS_REGION domain-containing protein. (500 aa)
D7B24_001849Uncharacterized protein. (405 aa)
RRB1Ribosome biosynthesis protein rrb1. (492 aa)
D7B24_002451Uncharacterized protein. (591 aa)
D7B24_009234CPSF_A domain-containing protein. (1160 aa)
GPB1Guanine nucleotide-binding protein subunit beta 1. (359 aa)
D7B24_002151WD_REPEATS_REGION domain-containing protein. (1027 aa)
D7B24_001862Uncharacterized protein. (598 aa)
D7B24_001842Uncharacterized protein. (496 aa)
IRE1Bifunctional endoribonuclease/protein kinase ire1. (1238 aa)
D7B24_002477Uncharacterized protein. (771 aa)
D7B24_001494Uncharacterized protein. (1700 aa)
SPT8Transcription factor spt8. (720 aa)
D7B24_003752Uncharacterized protein. (526 aa)
D7B24_002172Uncharacterized protein. (1535 aa)
SERAC1_2Serine active site containing protein 1. (165 aa)
D7B24_005512Uncharacterized protein. (759 aa)
D7B24_004504Uncharacterized protein. (844 aa)
VPS41Vacuolar protein sorting-associated protein 41. (1350 aa)
D7B24_004731DUF2415 domain-containing protein. (773 aa)
D7B24_004711WD_REPEATS_REGION domain-containing protein. (481 aa)
SOF1rRNA-processing protein sof1. (448 aa)
D7B24_004953Uncharacterized protein. (397 aa)
D7B24_005838Zinc_ribbon_16 domain-containing protein. (1049 aa)
D7B24_004724Uncharacterized protein. (453 aa)
D7B24_005469Uncharacterized protein. (722 aa)
D7B24_004797Uncharacterized protein. (363 aa)
VPS15Serine/threonine-protein kinase. (1543 aa)
D7B24_004500Uncharacterized protein. (1644 aa)
SEH1Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
D7B24_005332WD_REPEATS_REGION domain-containing protein. (565 aa)
D7B24_005804Uncharacterized protein. (661 aa)
D7B24_005618WD_REPEATS_REGION domain-containing protein. (403 aa)
CDC55Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (481 aa)
D7B24_006346RIC1 domain-containing protein. (1109 aa)
LST8TOR complex subunit lst8. (318 aa)
D7B24_005617WD_REPEATS_REGION domain-containing protein. (854 aa)
D7B24_005637Uncharacterized protein. (1574 aa)
VPS8Vacuolar protein sorting-associated protein 8. (1636 aa)
D7B24_006388WD_REPEATS_REGION domain-containing protein. (1160 aa)
D7B24_005709WD_REPEATS_REGION domain-containing protein. (719 aa)
WDR33WD repeat-containing protein 33. (674 aa)
D7B24_006380Uncharacterized protein. (518 aa)
TAF5Transcription initiation factor TFIID subunit 5. (769 aa)
MDV1Mitochondrial fission protein. (659 aa)
GLE2RNA export factor gle2. (358 aa)
D7B24_006106WD_REPEATS_REGION domain-containing protein. (607 aa)
CDC4SCF ubiquitin ligase complex subunit cdc4. (1031 aa)
PRP46Pre-mRNA-splicing factor prp46. (317 aa)
D7B24_007006WD_REPEATS_REGION domain-containing protein. (1485 aa)
THOC3THO complex subunit 3. (339 aa)
RSE1Pre-mRNA-splicing factor rse1. (1212 aa)
AIP1WD40 repeat-like protein. (610 aa)
GNB2L1Guanine nucleotide-binding protein subunit beta-2-like 1. (316 aa)
D7B24_006839F-box domain-containing protein. (1173 aa)
WDR36WD repeat-containing protein 36. (1042 aa)
D7B24_007691WD_REPEATS_REGION domain-containing protein. (1478 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
SWD2Member of Set1p complex, histone methyl transferase. (404 aa)
ATG18Autophagy-protein. (439 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1048 aa)
D7B24_007269Uncharacterized protein. (753 aa)
D7B24_008298Uncharacterized protein. (830 aa)
TIF34Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (333 aa)
CIAO1Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. (450 aa)
D7B24_008964Uncharacterized protein. (337 aa)
JIP5WD repeat-containing protein jip5. (431 aa)
FBXW7F-box/WD repeat-containing protein 7. (673 aa)
D7B24_008513Uncharacterized protein. (1388 aa)
D7B24_007990WD_REPEATS_REGION domain-containing protein. (531 aa)
D7B24_008197WD_REPEATS_REGION domain-containing protein. (1011 aa)
ASA1ASTRA complex subunit. (380 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
D7B24_000379F-box domain-containing protein. (1157 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
CDH1Substrate-specific activator of APC-dependent proteolysis. (642 aa)
D7B24_001313WD_REPEATS_REGION domain-containing protein. (1192 aa)
D7B24_009626WD_REPEATS_REGION domain-containing protein. (479 aa)
WDR6WD repeat-containing protein 6. (1121 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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