22 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MEX67	Nuclear mRNA export, poly(A)+RNA binding protein. (683 aa)
	NIC96	Nuclear pore complex subunit. (1179 aa)
	D7B24_003159	Uncharacterized protein. (309 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	D7B24_001894	Uncharacterized protein. (888 aa)
	D7B24_000574	Uncharacterized protein. (1201 aa)
	D7B24_008974	TPR_MLP1_2 domain-containing protein. (2093 aa)
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	JIP5	WD repeat-containing protein jip5. (431 aa)
	GLE2	RNA export factor gle2. (358 aa)
	D7B24_005647	RRM domain-containing protein. (256 aa)
	D7B24_005609	Uncharacterized protein. (638 aa)
	D7B24_004675	RanBD1 domain-containing protein. (491 aa)
	D7B24_003785	Nup188_C domain-containing protein. (1826 aa)
	D7B24_001870	Uncharacterized protein. (852 aa)
	YRB1	Ran GTPase-binding protein yrb1. (257 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	D7B24_005949	RRM domain-containing protein. (364 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000574	D7B24_000695	A0A3M9Y2J6	A0A3M9YK93	Uncharacterized protein.	Nup54 domain-containing protein.	0.906
D7B24_000574	D7B24_001181	A0A3M9Y2J6	A0A3M9Y092	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.988
D7B24_000574	D7B24_001642	A0A3M9Y2J6	A0A3M9XZ87	Uncharacterized protein.	Uncharacterized protein.	0.857
D7B24_000574	D7B24_002297	A0A3M9Y2J6	A0A3M9XYS3	Uncharacterized protein.	Uncharacterized protein.	0.810
D7B24_000574	D7B24_003785	A0A3M9Y2J6	A0A3M9YFL7	Uncharacterized protein.	Nup188_C domain-containing protein.	0.946
D7B24_000574	D7B24_005906	A0A3M9Y2J6	A0A3M9YJL2	Uncharacterized protein.	NUP214 domain-containing protein.	0.893
D7B24_000574	D7B24_008513	A0A3M9Y2J6	A0A3M9Y5M6	Uncharacterized protein.	Uncharacterized protein.	0.988
D7B24_000574	D7B24_008974	A0A3M9Y2J6	A0A3M9Y3U3	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.486
D7B24_000574	D7B24_009383	A0A3M9Y2J6	A0A3M9Y3W9	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.985
D7B24_000574	MEX67	A0A3M9Y2J6	A0A3M9YNW4	Uncharacterized protein.	Nuclear mRNA export, poly(A)+RNA binding protein.	0.575
D7B24_000574	NIC96	A0A3M9Y2J6	A0A3M9XUR9	Uncharacterized protein.	Nuclear pore complex subunit.	0.866
D7B24_000695	D7B24_000574	A0A3M9YK93	A0A3M9Y2J6	Nup54 domain-containing protein.	Uncharacterized protein.	0.906
D7B24_000695	D7B24_001181	A0A3M9YK93	A0A3M9Y092	Nup54 domain-containing protein.	Peptidase S59 domain-containing protein.	0.988
D7B24_000695	D7B24_001642	A0A3M9YK93	A0A3M9XZ87	Nup54 domain-containing protein.	Uncharacterized protein.	0.995
D7B24_000695	D7B24_001870	A0A3M9YK93	A0A3M9YGI5	Nup54 domain-containing protein.	Uncharacterized protein.	0.913
D7B24_000695	D7B24_002297	A0A3M9YK93	A0A3M9XYS3	Nup54 domain-containing protein.	Uncharacterized protein.	0.994
D7B24_000695	D7B24_003785	A0A3M9YK93	A0A3M9YFL7	Nup54 domain-containing protein.	Nup188_C domain-containing protein.	0.945
D7B24_000695	D7B24_004675	A0A3M9YK93	A0A3M9YF52	Nup54 domain-containing protein.	RanBD1 domain-containing protein.	0.905
D7B24_000695	D7B24_005647	A0A3M9YK93	A0A3M9YD42	Nup54 domain-containing protein.	RRM domain-containing protein.	0.629
D7B24_000695	D7B24_005906	A0A3M9YK93	A0A3M9YJL2	Nup54 domain-containing protein.	NUP214 domain-containing protein.	0.975