37 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JIP5	WD repeat-containing protein jip5. (431 aa)
	D7B24_001870	Uncharacterized protein. (852 aa)
	NIC96	Nuclear pore complex subunit. (1179 aa)
	D7B24_003159	Uncharacterized protein. (309 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_003153	Guanylate kinase-like domain-containing protein. (858 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	D7B24_001894	Uncharacterized protein. (888 aa)
	D7B24_000574	Uncharacterized protein. (1201 aa)
	D7B24_000520	Uncharacterized protein. (596 aa)
	D7B24_008974	TPR_MLP1_2 domain-containing protein. (2093 aa)
	D7B24_009095	Uncharacterized protein. (548 aa)
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	SRRM1	Serine/arginine repetitive matrix protein 1. (391 aa)
	THO2	THO complex subunit 2. (2304 aa)
	D7B24_007990	WD_REPEATS_REGION domain-containing protein. (531 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	D7B24_004675	RanBD1 domain-containing protein. (491 aa)
	D7B24_005609	Uncharacterized protein. (638 aa)
	D7B24_005647	RRM domain-containing protein. (256 aa)
	D7B24_000135	Uncharacterized protein. (213 aa)
	MEX67	Nuclear mRNA export, poly(A)+RNA binding protein. (683 aa)
	D7B24_005949	RRM domain-containing protein. (364 aa)
	SLU7	mRNA splicing protein. (468 aa)
	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (963 aa)
	D7B24_005962	Uncharacterized protein. (210 aa)
	YRB1	Ran GTPase-binding protein yrb1. (257 aa)
	D7B24_000699	RRM domain-containing protein. (310 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	D7B24_005731	RRM domain-containing protein. (197 aa)
	GLE2	RNA export factor gle2. (358 aa)
	MNH1	Protein mago nashi. (154 aa)
	D7B24_003785	Nup188_C domain-containing protein. (1826 aa)
	D7B24_007377	Uncharacterized protein. (352 aa)
	THOC3	THO complex subunit 3. (339 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_000135	D7B24_000520	A0A3M9YQB9	A0A3M9Y2W8	Uncharacterized protein.	Uncharacterized protein.	0.656
D7B24_000135	D7B24_000699	A0A3M9YQB9	A0A3M9YJ56	Uncharacterized protein.	RRM domain-containing protein.	0.670
D7B24_000135	D7B24_003153	A0A3M9YQB9	A0A3M9XZS4	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.999
D7B24_000135	D7B24_005647	A0A3M9YQB9	A0A3M9YD42	Uncharacterized protein.	RRM domain-containing protein.	0.974
D7B24_000135	D7B24_005949	A0A3M9YQB9	A0A3M9YMI4	Uncharacterized protein.	RRM domain-containing protein.	0.974
D7B24_000135	D7B24_005962	A0A3M9YQB9	A0A3M9YL88	Uncharacterized protein.	Uncharacterized protein.	0.619
D7B24_000135	D7B24_007377	A0A3M9YQB9	A0A3M9Y8I5	Uncharacterized protein.	Uncharacterized protein.	0.999
D7B24_000135	DHX38	A0A3M9YQB9	A0A3M9YL99	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.	0.636
D7B24_000135	GLE2	A0A3M9YQB9	A0A3M9YA93	Uncharacterized protein.	RNA export factor gle2.	0.553
D7B24_000135	MEX67	A0A3M9YQB9	A0A3M9YNW4	Uncharacterized protein.	Nuclear mRNA export, poly(A)+RNA binding protein.	0.970
D7B24_000135	MNH1	A0A3M9YQB9	A0A3M9Y5X6	Uncharacterized protein.	Protein mago nashi.	0.637
D7B24_000135	THO2	A0A3M9YQB9	A0A3M9Y4T5	Uncharacterized protein.	THO complex subunit 2.	0.999
D7B24_000135	THOC3	A0A3M9YQB9	A0A3M9Y9J4	Uncharacterized protein.	THO complex subunit 3.	0.999
D7B24_000520	D7B24_000135	A0A3M9Y2W8	A0A3M9YQB9	Uncharacterized protein.	Uncharacterized protein.	0.656
D7B24_000520	D7B24_000699	A0A3M9Y2W8	A0A3M9YJ56	Uncharacterized protein.	RRM domain-containing protein.	0.744
D7B24_000520	D7B24_003153	A0A3M9Y2W8	A0A3M9XZS4	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.638
D7B24_000520	D7B24_005647	A0A3M9Y2W8	A0A3M9YD42	Uncharacterized protein.	RRM domain-containing protein.	0.841
D7B24_000520	D7B24_005731	A0A3M9Y2W8	A0A3M9YB19	Uncharacterized protein.	RRM domain-containing protein.	0.632
D7B24_000520	D7B24_005949	A0A3M9Y2W8	A0A3M9YMI4	Uncharacterized protein.	RRM domain-containing protein.	0.841
D7B24_000520	D7B24_005962	A0A3M9Y2W8	A0A3M9YL88	Uncharacterized protein.	Uncharacterized protein.	0.999