104 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_000965	zf-RING-like domain-containing protein. (345 aa)
	D7B24_002002	Uncharacterized protein. (849 aa)
	D7B24_001894	Uncharacterized protein. (888 aa)
	D7B24_002231	Uncharacterized protein. (604 aa)
	D7B24_000574	Uncharacterized protein. (1201 aa)
	D7B24_009451	Uncharacterized protein. (223 aa)
	D7B24_001235	Uncharacterized protein. (1014 aa)
	D7B24_009382	Ubiquitin-like domain-containing protein. (98 aa)
	D7B24_008974	TPR_MLP1_2 domain-containing protein. (2093 aa)
	SMC1B	Structural maintenance of chromosomes protein 1B. (1272 aa)
	D7B24_009383	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (855 aa)
	PCN1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	RFA1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (617 aa)
	D7B24_008346	Uncharacterized protein. (590 aa)
	D7B24_008513	Uncharacterized protein. (1388 aa)
	D7B24_007917	PKS_ER domain-containing protein. (361 aa)
	TOP2	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1744 aa)
	D7B24_008797	Vezatin domain-containing protein. (615 aa)
	JIP5	WD repeat-containing protein jip5. (431 aa)
	SIZ1	SUMO ligase siz1. (503 aa)
	HHF1_2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	D7B24_007752	SP-RING-type domain-containing protein. (267 aa)
	D7B24_008361	Uncharacterized protein. (7576 aa)
	NSE4	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. (436 aa)
	D7B24_007349	DUF1115 domain-containing protein. (291 aa)
	CDC31	Centrin. (191 aa)
	MCD1	Sister chromatid cohesion protein 1. (651 aa)
	D7B24_007697	Uncharacterized protein. (918 aa)
	FKH2	Transcription factor. (444 aa)
	D7B24_007136	Uncharacterized protein. (116 aa)
	RPD3	Histone deacetylase. (777 aa)
	D7B24_006590	HTH CENPB-type domain-containing protein. (597 aa)
	D7B24_006566	ThiF domain-containing protein. (487 aa)
	D7B24_006335	BHLH domain-containing protein. (530 aa)
	GLE2	RNA export factor gle2. (358 aa)
	D7B24_006577	Uncharacterized protein. (326 aa)
	D7B24_006134	PKS_ER domain-containing protein. (346 aa)
	D7B24_007663	ULP_PROTEASE domain-containing protein. (890 aa)
	D7B24_005262	YDG domain-containing protein. (374 aa)
	D7B24_006111	Uncharacterized protein. (434 aa)
	D7B24_005514	PKS_ER domain-containing protein. (360 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	UBC9	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	ADH1	Alcohol dehydrogenase. (352 aa)
	D7B24_005609	Uncharacterized protein. (638 aa)
	NOP58	Nucleolar protein 58. (655 aa)
	D7B24_004153	PA14 domain-containing protein. (212 aa)
	DBP2	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (560 aa)
	D7B24_003571	Uncharacterized protein. (704 aa)
	D7B24_004675	RanBD1 domain-containing protein. (491 aa)
	D7B24_006937	Uncharacterized protein. (298 aa)
	D7B24_004657	Uncharacterized protein. (214 aa)
	NIC96	Nuclear pore complex subunit. (1179 aa)
	D7B24_003331	PKS_ER domain-containing protein. (362 aa)
	D7B24_003835	Uncharacterized protein. (643 aa)
	D7B24_003720	Uncharacterized protein. (323 aa)
	D7B24_003137	PKS_ER domain-containing protein. (347 aa)
	D7B24_003342	Uncharacterized protein. (95 aa)
	D7B24_002879	Uncharacterized protein. (293 aa)
	SMC5	Structural maintenance of chromosomes protein 5. (1117 aa)
	D7B24_002652	UDG domain-containing protein. (320 aa)
	YAK1	Dual specificity protein kinase yak1. (908 aa)
	D7B24_002950	Uncharacterized protein. (437 aa)
	D7B24_002234	Uncharacterized protein. (420 aa)
	D7B24_002839	ADH_N domain-containing protein. (376 aa)
	UBA2	E1 ubiquitin-activating protein uba2. (662 aa)
	D7B24_002297	Uncharacterized protein. (1396 aa)
	TOP1	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (911 aa)
	D7B24_001642	Uncharacterized protein. (1665 aa)
	D7B24_003689	MAGE domain-containing protein. (338 aa)
	D7B24_001345	PKS_ER domain-containing protein. (363 aa)
	D7B24_001308	PKS_ER domain-containing protein. (358 aa)
	D7B24_001181	Peptidase S59 domain-containing protein. (1960 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	D7B24_000907	Uncharacterized protein. (700 aa)
	D7B24_000868	PKS_ER domain-containing protein. (357 aa)
	SMC6	Structural maintenance of chromosomes protein 6. (1165 aa)
	D7B24_001178	Uncharacterized protein. (819 aa)
	D7B24_000824	Fork-head domain-containing protein. (747 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_006675	BRCT domain-containing protein. (1228 aa)
	D7B24_007521	ULP_PROTEASE domain-containing protein. (748 aa)
	D7B24_003223	ADH_zinc_N domain-containing protein. (158 aa)
	D7B24_000639	Uncharacterized protein. (300 aa)
	D7B24_002116	Chromatin modification-related protein. (700 aa)
	D7B24_000232	Uncharacterized protein. (738 aa)
	YRB1	Ran GTPase-binding protein yrb1. (257 aa)
	D7B24_001516	PKS_ER domain-containing protein. (359 aa)
	D7B24_001880	Uncharacterized protein. (100 aa)
	D7B24_001870	Uncharacterized protein. (852 aa)
	RAD52	DNA repair protein rad52. (524 aa)
	D7B24_003258	PA14 domain-containing protein. (342 aa)
	D7B24_002702	Uncharacterized protein. (415 aa)
	D7B24_003785	Nup188_C domain-containing protein. (1826 aa)
	D7B24_004608	Uncharacterized protein. (1063 aa)
	D7B24_003282	PKS_ER domain-containing protein. (360 aa)
	D7B24_004155	Uncharacterized protein. (528 aa)
	D7B24_002978	Uncharacterized protein. (134 aa)
	D7B24_008662	Uncharacterized protein. (286 aa)
	D7B24_000695	Nup54 domain-containing protein. (356 aa)
	D7B24_003466	SP-RING-type domain-containing protein. (402 aa)
	D7B24_008657	Uncharacterized protein. (489 aa)
	D7B24_000233	PKS_ER domain-containing protein. (341 aa)
	D7B24_008056	Uncharacterized protein. (134 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADH1	D7B24_000868	A0A3M9YDE9	A0A3M9Y0T3	Alcohol dehydrogenase.	PKS_ER domain-containing protein.	0.778
ADH1	D7B24_003137	A0A3M9YDE9	A0A3M9XWL5	Alcohol dehydrogenase.	PKS_ER domain-containing protein.	0.871
ADH1	D7B24_003223	A0A3M9YDE9	A0A3M9YJ55	Alcohol dehydrogenase.	ADH_zinc_N domain-containing protein.	0.704
ADH1	D7B24_006134	A0A3M9YDE9	A0A3M9YAQ2	Alcohol dehydrogenase.	PKS_ER domain-containing protein.	0.703
CDC31	D7B24_001178	A0A3M9Y7P4	A0A3M9Y0Z5	Centrin.	Uncharacterized protein.	0.914
CDC31	D7B24_001534	A0A3M9Y7P4	A0A3M9Y0Q2	Centrin.	RanBD1 domain-containing protein.	0.646
CDC31	D7B24_004608	A0A3M9Y7P4	A0A3M9YFH8	Centrin.	Uncharacterized protein.	0.914
CDC31	D7B24_008974	A0A3M9Y7P4	A0A3M9Y3U3	Centrin.	TPR_MLP1_2 domain-containing protein.	0.472
CDC31	D7B24_009382	A0A3M9Y7P4	A0A3M9Y3H7	Centrin.	Ubiquitin-like domain-containing protein.	0.697
CDC31	RFA1	A0A3M9Y7P4	A0A3M9Y579	Centrin.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.614
CDC31	UBC9	A0A3M9Y7P4	A0A3M9YDC7	Centrin.	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.677
D7B24_000233	D7B24_000868	A0A3M9YKF6	A0A3M9Y0T3	PKS_ER domain-containing protein.	PKS_ER domain-containing protein.	0.605
D7B24_000233	D7B24_003137	A0A3M9YKF6	A0A3M9XWL5	PKS_ER domain-containing protein.	PKS_ER domain-containing protein.	0.698
D7B24_000233	D7B24_006134	A0A3M9YKF6	A0A3M9YAQ2	PKS_ER domain-containing protein.	PKS_ER domain-containing protein.	0.401
D7B24_000574	D7B24_000695	A0A3M9Y2J6	A0A3M9YK93	Uncharacterized protein.	Nup54 domain-containing protein.	0.906
D7B24_000574	D7B24_001181	A0A3M9Y2J6	A0A3M9Y092	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.988
D7B24_000574	D7B24_001642	A0A3M9Y2J6	A0A3M9XZ87	Uncharacterized protein.	Uncharacterized protein.	0.857
D7B24_000574	D7B24_002297	A0A3M9Y2J6	A0A3M9XYS3	Uncharacterized protein.	Uncharacterized protein.	0.810
D7B24_000574	D7B24_003785	A0A3M9Y2J6	A0A3M9YFL7	Uncharacterized protein.	Nup188_C domain-containing protein.	0.946
D7B24_000574	D7B24_005906	A0A3M9Y2J6	A0A3M9YJL2	Uncharacterized protein.	NUP214 domain-containing protein.	0.893