21 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_003720	Uncharacterized protein. (323 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	RPD3	Histone deacetylase. (777 aa)
	HHF1_2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	SIZ1	SUMO ligase siz1. (503 aa)
	D7B24_009382	Ubiquitin-like domain-containing protein. (98 aa)
	D7B24_009451	Uncharacterized protein. (223 aa)
	D7B24_002231	Uncharacterized protein. (604 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	D7B24_003342	Uncharacterized protein. (95 aa)
	UBC9	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	D7B24_003835	Uncharacterized protein. (643 aa)
	D7B24_004657	Uncharacterized protein. (214 aa)
	D7B24_006937	Uncharacterized protein. (298 aa)
	D7B24_008056	Uncharacterized protein. (134 aa)
	D7B24_008662	Uncharacterized protein. (286 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_003258	PA14 domain-containing protein. (342 aa)
	D7B24_004155	Uncharacterized protein. (528 aa)
	D7B24_003571	Uncharacterized protein. (704 aa)
	D7B24_004153	PA14 domain-containing protein. (212 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_001534	D7B24_002231	A0A3M9Y0Q2	A0A3M9Y268	RanBD1 domain-containing protein.	Uncharacterized protein.	0.997
D7B24_001534	D7B24_003258	A0A3M9Y0Q2	A0A3M9YG65	RanBD1 domain-containing protein.	PA14 domain-containing protein.	0.997
D7B24_001534	D7B24_003720	A0A3M9Y0Q2	A0A3M9XWK2	RanBD1 domain-containing protein.	Uncharacterized protein.	0.999
D7B24_001534	D7B24_004153	A0A3M9Y0Q2	A0A3M9YE87	RanBD1 domain-containing protein.	PA14 domain-containing protein.	0.997
D7B24_001534	D7B24_005906	A0A3M9Y0Q2	A0A3M9YJL2	RanBD1 domain-containing protein.	NUP214 domain-containing protein.	0.999
D7B24_001534	D7B24_008662	A0A3M9Y0Q2	A0A3M9YJL5	RanBD1 domain-containing protein.	Uncharacterized protein.	0.997
D7B24_001534	D7B24_009382	A0A3M9Y0Q2	A0A3M9Y3H7	RanBD1 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
D7B24_001534	D7B24_009451	A0A3M9Y0Q2	A0A3M9Y2K6	RanBD1 domain-containing protein.	Uncharacterized protein.	0.997
D7B24_001534	RPD3	A0A3M9Y0Q2	A0A3M9Y8S1	RanBD1 domain-containing protein.	Histone deacetylase.	0.697
D7B24_001534	SEH1	A0A3M9Y0Q2	A0A3M9YD89	RanBD1 domain-containing protein.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.999
D7B24_001534	UBC9	A0A3M9Y0Q2	A0A3M9YDC7	RanBD1 domain-containing protein.	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.998
D7B24_002231	D7B24_001534	A0A3M9Y268	A0A3M9Y0Q2	Uncharacterized protein.	RanBD1 domain-containing protein.	0.997
D7B24_002231	D7B24_003720	A0A3M9Y268	A0A3M9XWK2	Uncharacterized protein.	Uncharacterized protein.	0.644
D7B24_002231	D7B24_005906	A0A3M9Y268	A0A3M9YJL2	Uncharacterized protein.	NUP214 domain-containing protein.	0.644
D7B24_002231	D7B24_009382	A0A3M9Y268	A0A3M9Y3H7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.609
D7B24_002231	SEH1	A0A3M9Y268	A0A3M9YD89	Uncharacterized protein.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.754
D7B24_002231	UBC9	A0A3M9Y268	A0A3M9YDC7	Uncharacterized protein.	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.592
D7B24_003258	D7B24_001534	A0A3M9YG65	A0A3M9Y0Q2	PA14 domain-containing protein.	RanBD1 domain-containing protein.	0.997
D7B24_003258	D7B24_003720	A0A3M9YG65	A0A3M9XWK2	PA14 domain-containing protein.	Uncharacterized protein.	0.644
D7B24_003258	D7B24_005906	A0A3M9YG65	A0A3M9YJL2	PA14 domain-containing protein.	NUP214 domain-containing protein.	0.644