16 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	D7B24_009451	Uncharacterized protein. (223 aa)
	D7B24_003720	Uncharacterized protein. (323 aa)
	TOP1	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (911 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	D7B24_002231	Uncharacterized protein. (604 aa)
	D7B24_009382	Ubiquitin-like domain-containing protein. (98 aa)
	PCN1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	TOP2	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1744 aa)
	D7B24_008797	Vezatin domain-containing protein. (615 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	UBC9	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	D7B24_004153	PA14 domain-containing protein. (212 aa)
	D7B24_002702	Uncharacterized protein. (415 aa)
	D7B24_003258	PA14 domain-containing protein. (342 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_008662	Uncharacterized protein. (286 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_001534	D7B24_002231	A0A3M9Y0Q2	A0A3M9Y268	RanBD1 domain-containing protein.	Uncharacterized protein.	0.997
D7B24_001534	D7B24_003258	A0A3M9Y0Q2	A0A3M9YG65	RanBD1 domain-containing protein.	PA14 domain-containing protein.	0.997
D7B24_001534	D7B24_003720	A0A3M9Y0Q2	A0A3M9XWK2	RanBD1 domain-containing protein.	Uncharacterized protein.	0.999
D7B24_001534	D7B24_004153	A0A3M9Y0Q2	A0A3M9YE87	RanBD1 domain-containing protein.	PA14 domain-containing protein.	0.997
D7B24_001534	D7B24_005906	A0A3M9Y0Q2	A0A3M9YJL2	RanBD1 domain-containing protein.	NUP214 domain-containing protein.	0.999
D7B24_001534	D7B24_008662	A0A3M9Y0Q2	A0A3M9YJL5	RanBD1 domain-containing protein.	Uncharacterized protein.	0.997
D7B24_001534	D7B24_009382	A0A3M9Y0Q2	A0A3M9Y3H7	RanBD1 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
D7B24_001534	D7B24_009451	A0A3M9Y0Q2	A0A3M9Y2K6	RanBD1 domain-containing protein.	Uncharacterized protein.	0.997
D7B24_001534	SEH1	A0A3M9Y0Q2	A0A3M9YD89	RanBD1 domain-containing protein.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.999
D7B24_001534	UBC9	A0A3M9Y0Q2	A0A3M9YDC7	RanBD1 domain-containing protein.	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.998
D7B24_002231	D7B24_001534	A0A3M9Y268	A0A3M9Y0Q2	Uncharacterized protein.	RanBD1 domain-containing protein.	0.997
D7B24_002231	D7B24_003720	A0A3M9Y268	A0A3M9XWK2	Uncharacterized protein.	Uncharacterized protein.	0.644
D7B24_002231	D7B24_005906	A0A3M9Y268	A0A3M9YJL2	Uncharacterized protein.	NUP214 domain-containing protein.	0.644
D7B24_002231	D7B24_009382	A0A3M9Y268	A0A3M9Y3H7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.609
D7B24_002231	SEH1	A0A3M9Y268	A0A3M9YD89	Uncharacterized protein.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.754
D7B24_002231	UBC9	A0A3M9Y268	A0A3M9YDC7	Uncharacterized protein.	E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.592
D7B24_002702	D7B24_008797	A0A3M9YG09	A0A3M9Y691	Uncharacterized protein.	Vezatin domain-containing protein.	0.599
D7B24_002702	D7B24_009382	A0A3M9YG09	A0A3M9Y3H7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.830
D7B24_002702	PCN1	A0A3M9YG09	A0A3M9Y511	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.599
D7B24_002702	TOP1	A0A3M9YG09	A0A3M9XYX8	Uncharacterized protein.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]	0.914