31 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_008361	Uncharacterized protein. (7576 aa)
	D7B24_007058	FCP1 homology domain-containing protein. (347 aa)
	D7B24_007682	Uncharacterized protein. (2559 aa)
	D7B24_006405	Uncharacterized protein. (1017 aa)
	D7B24_005298	Uncharacterized protein. (244 aa)
	NEM1	Nuclear envelope morphology protein 1. (503 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	D7B24_004153	PA14 domain-containing protein. (212 aa)
	HTZ1	Histone H2A; Belongs to the histone H2A family. (142 aa)
	D7B24_003258	PA14 domain-containing protein. (342 aa)
	D7B24_009224	Uncharacterized protein. (3416 aa)
	D7B24_008126	SMC hinge domain-containing protein. (1476 aa)
	D7B24_005906	NUP214 domain-containing protein. (1606 aa)
	D7B24_008662	Uncharacterized protein. (286 aa)
	D7B24_008657	Uncharacterized protein. (489 aa)
	CDC5	Cell cycle serine/threonine-protein kinase cdc5/MSD2. (1003 aa)
	RIM15_2	Rim15, signal transduction response regulator. (384 aa)
	YPT1	GTP-binding protein of the rab. (204 aa)
	D7B24_002285	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (294 aa)
	D7B24_003409	Uncharacterized protein. (452 aa)
	D7B24_003720	Uncharacterized protein. (323 aa)
	D7B24_001534	RanBD1 domain-containing protein. (1256 aa)
	HTA1	Histone H2A; Belongs to the histone H2A family. (191 aa)
	D7B24_002231	Uncharacterized protein. (604 aa)
	D7B24_009451	Uncharacterized protein. (223 aa)
	D7B24_001235	Uncharacterized protein. (1014 aa)
	D7B24_000937	LNS2 domain-containing protein. (776 aa)
	HTB1	Histone H2B; Belongs to the histone H2B family. (137 aa)
	D7B24_009406	Uncharacterized protein. (658 aa)
	HHF1_2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	D7B24_000501	GRASP55_65 domain-containing protein. (349 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC5	D7B24_000501	A0A3M9YL36	A0A3M9Y1L5	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	GRASP55_65 domain-containing protein.	0.990
CDC5	D7B24_000937	A0A3M9YL36	A0A3M9Y4H8	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	LNS2 domain-containing protein.	0.428
CDC5	D7B24_001235	A0A3M9YL36	A0A3M9Y376	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Uncharacterized protein.	0.535
CDC5	D7B24_001534	A0A3M9YL36	A0A3M9Y0Q2	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	RanBD1 domain-containing protein.	0.674
CDC5	D7B24_006405	A0A3M9YL36	A0A3M9Y9G6	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Uncharacterized protein.	0.597
CDC5	D7B24_008126	A0A3M9YL36	A0A3M9YJ94	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	SMC hinge domain-containing protein.	0.885
CDC5	D7B24_008361	A0A3M9YL36	A0A3M9Y759	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Uncharacterized protein.	0.535
CDC5	D7B24_008657	A0A3M9YL36	A0A3M9YKD3	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Uncharacterized protein.	0.535
CDC5	HHF1_2	A0A3M9YL36	A0A3M9Y6R3	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.695
CDC5	HTA1	A0A3M9YL36	A0A3M9Y1R0	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Histone H2A; Belongs to the histone H2A family.	0.644
CDC5	HTB1	A0A3M9YL36	A0A3M9Y4T2	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Histone H2B; Belongs to the histone H2B family.	0.645
CDC5	HTZ1	A0A3M9YL36	A0A3M9YFA8	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Histone H2A; Belongs to the histone H2A family.	0.759
CDC5	RIM15_2	A0A3M9YL36	A0A3M9YQ59	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Rim15, signal transduction response regulator.	0.526
CDC5	SEH1	A0A3M9YL36	A0A3M9YD89	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family.	0.739
CDC5	YPT1	A0A3M9YL36	A0A3M9YDG3	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	GTP-binding protein of the rab.	0.661
D7B24_000501	CDC5	A0A3M9Y1L5	A0A3M9YL36	GRASP55_65 domain-containing protein.	Cell cycle serine/threonine-protein kinase cdc5/MSD2.	0.990
D7B24_000501	D7B24_005298	A0A3M9Y1L5	A0A3M9YBT9	GRASP55_65 domain-containing protein.	Uncharacterized protein.	0.823
D7B24_000501	D7B24_007682	A0A3M9Y1L5	A0A3M9Y9A6	GRASP55_65 domain-containing protein.	Uncharacterized protein.	0.823
D7B24_000501	D7B24_009224	A0A3M9Y1L5	A0A3M9YHZ6	GRASP55_65 domain-containing protein.	Uncharacterized protein.	0.823
D7B24_000501	YPT1	A0A3M9Y1L5	A0A3M9YDG3	GRASP55_65 domain-containing protein.	GTP-binding protein of the rab.	0.826