STRINGSTRING
D7B24_005025 D7B24_005025 D7B24_004424 D7B24_004424 D7B24_004236 D7B24_004236 GNL3 GNL3 ENP1 ENP1 D7B24_004397 D7B24_004397 LAS1 LAS1 D7B24_004034 D7B24_004034 RPS29 RPS29 SPB1 SPB1 UTP11 UTP11 D7B24_002946 D7B24_002946 RRP40 RRP40 D7B24_003315 D7B24_003315 D7B24_002405 D7B24_002405 D7B24_002292 D7B24_002292 ROK1 ROK1 ERB1 ERB1 D7B24_002287 D7B24_002287 D7B24_001770 D7B24_001770 RPS16 RPS16 D7B24_001277 D7B24_001277 D7B24_001246 D7B24_001246 D7B24_001034 D7B24_001034 NOP7 NOP7 D7B24_002945 D7B24_002945 EXOSC8 EXOSC8 RRP5 RRP5 EMG1 EMG1 D7B24_000800 D7B24_000800 RPL2A RPL2A YTM1 YTM1 RPS27 RPS27 IMP3 IMP3 D7B24_001031 D7B24_001031 RPS13 RPS13 D7B24_002065 D7B24_002065 RPS7 RPS7 KRE33 KRE33 RPS14 RPS14 RRP46 RRP46 MTR4 MTR4 HRR25 HRR25 RPS28A_2 RPS28A_2 RPS2 RPS2 D7B24_009589 D7B24_009589 D7B24_001576 D7B24_001576 RPP40 RPP40 D7B24_009153 D7B24_009153 D7B24_009082 D7B24_009082 D7B24_009062 D7B24_009062 NOL6 NOL6 TSR3 TSR3 UTP5 UTP5 UTP13 UTP13 D7B24_008613 D7B24_008613 UTP10 UTP10 RRP4 RRP4 CSL4 CSL4 KRR1 KRR1 D7B24_009077 D7B24_009077 NOP56 NOP56 D7B24_008333 D7B24_008333 D7B24_008330 D7B24_008330 NOP4 NOP4 NOP14 NOP14 LTV1 LTV1 RPL34 RPL34 D7B24_007784 D7B24_007784 RIOK2 RIOK2 RPS3 RPS3 UTP4 UTP4 D7B24_006963 D7B24_006963 UTP7 UTP7 D7B24_008005 D7B24_008005 WDR36 WDR36 ECM16 ECM16 RPS17 RPS17 UTP25 UTP25 D7B24_006441 D7B24_006441 RRP36 RRP36 DBP8 DBP8 D7B24_007317 D7B24_007317 D7B24_006302 D7B24_006302 cnxG cnxG D7B24_007663 D7B24_007663 D7B24_006272 D7B24_006272 NOP1 NOP1 D7B24_005721 D7B24_005721 RPS19 RPS19 RPS5 RPS5 DIM1 DIM1 D7B24_006058 D7B24_006058 MTR3 MTR3 RIOK1 RIOK1 NIP7 NIP7 REXO4 REXO4 D7B24_005588 D7B24_005588 SNU13 SNU13 HHP1 HHP1 RPS25 RPS25 RPS28A_1 RPS28A_1 D7B24_005226 D7B24_005226 RPS8A RPS8A D7B24_005720 D7B24_005720 STS1 STS1 NOP58 NOP58 RRP3 RRP3 SOF1 SOF1 RPS15 RPS15 RPS20 RPS20 IMP4 IMP4 RPS6 RPS6 RPS0 RPS0 D7B24_005317 D7B24_005317 NOB1 NOB1 UTP6 UTP6 UTP20 UTP20 XRN2 XRN2 D7B24_002173 D7B24_002173 D7B24_001045 D7B24_001045 BMS1 BMS1 RPS18 RPS18 SKI6 SKI6 GRC3 GRC3 D7B24_007521 D7B24_007521 D7B24_005912 D7B24_005912 RPS4 RPS4 RPS26 RPS26 WDR3 WDR3 D7B24_003426 D7B24_003426 RRP9 RRP9 D7B24_003561 D7B24_003561 RPS23 RPS23 D7B24_005981 D7B24_005981 D7B24_006002 D7B24_006002 D7B24_005089 D7B24_005089 PNO1 PNO1 RPS9 RPS9 RRP6 RRP6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D7B24_005025Uncharacterized protein. (181 aa)
D7B24_004424Uncharacterized protein. (365 aa)
D7B24_004236Uncharacterized protein. (340 aa)
GNL3Guanine nucleotide-binding protein-like 3. (545 aa)
ENP1SnoRNA-binding rRNA-processing protein. (483 aa)
D7B24_004397Uncharacterized protein. (269 aa)
LAS1rRNA-processing protein las1. (290 aa)
D7B24_004034S10_plectin domain-containing protein. (167 aa)
RPS2940S ribosomal protein S29. (56 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (862 aa)
UTP11Small subunit (SSU) processome component. (269 aa)
D7B24_002946Uncharacterized protein. (81 aa)
RRP40Exosome non-catalytic core subunit rrp40. (245 aa)
D7B24_003315Uncharacterized protein. (234 aa)
D7B24_002405WD_REPEATS_REGION domain-containing protein. (468 aa)
D7B24_002292S4 RNA-binding domain-containing protein. (211 aa)
ROK1RNA-dependent ATPase rok1. (768 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
D7B24_002287WD_REPEATS_REGION domain-containing protein. (905 aa)
D7B24_001770RTC domain-containing protein. (414 aa)
RPS1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
D7B24_001277SpoU_sub_bind domain-containing protein. (619 aa)
D7B24_001246Ipi1_N domain-containing protein. (339 aa)
D7B24_001034Uncharacterized protein. (221 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (665 aa)
D7B24_002945Uncharacterized protein. (281 aa)
EXOSC8Exosome complex component RRP43. (336 aa)
RRP5rRNA bioproteinsis protein rrp5. (1809 aa)
EMG118S rRNA pseudouridine methyltransferase. (276 aa)
D7B24_000800Sas10 domain-containing protein. (668 aa)
RPL2A60S ribosomal protein L2A. (254 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
RPS2740S ribosomal protein S27. (238 aa)
IMP3Small subunit (SSU) processome component. (183 aa)
D7B24_001031Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (119 aa)
RPS13Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
D7B24_002065Uncharacterized protein. (332 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
KRE33RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1065 aa)
RPS14Ribosomal protein S14, S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
RRP46Exosome non-catalytic core subunit rrp46. (249 aa)
MTR4ATP-dependent RNA helicase mtr4. (1106 aa)
HRR25Serine/threonine protein kinase; Belongs to the protein kinase superfamily. (324 aa)
RPS28A_240S ribosomal protein S28. (68 aa)
RPS240S ribosomal protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
D7B24_009589Uncharacterized protein. (876 aa)
D7B24_001576RNase_PH domain-containing protein. (366 aa)
RPP40Ribonuclease P protein subunit p40. (338 aa)
D7B24_009153Uncharacterized protein. (347 aa)
D7B24_009082Sec2p domain-containing protein. (329 aa)
D7B24_009062WD_REPEATS_REGION domain-containing protein. (968 aa)
NOL6U3 small nucleolar RNA-associated protein 22. (1102 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (412 aa)
UTP5Small subunit (SSU) processome component. (433 aa)
UTP13U3 small nucleolar RNA-associated protein 13. (906 aa)
D7B24_008613Ribosomal_L28e domain-containing protein. (158 aa)
UTP10SnoRNA-binding rRNA-processing protein utp10. (1809 aa)
RRP4Exosome non-catalytic core subunit rrp4. (353 aa)
CSL4Exosome 3'->5 exonuclease subunit ski4 (Csl4). (211 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (319 aa)
D7B24_009077Uncharacterized protein. (200 aa)
NOP56snoRNP complex protein nop56. (510 aa)
D7B24_008333Ribosomal_L18e/L15P domain-containing protein. (195 aa)
D7B24_008330FtsJ domain-containing protein. (202 aa)
NOP4RNA recognition motif-containing protein. (785 aa)
NOP14Nucleolar complex protein 14. (915 aa)
LTV1Protein ltv1. (428 aa)
RPL3460S ribosomal protein L34. (116 aa)
D7B24_007784Bms1-type G domain-containing protein. (820 aa)
RIOK2Serine/threonine-protein kinase RIO2. (419 aa)
RPS340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
UTP4U3 small nucleolar RNA-associated protein. (911 aa)
D7B24_006963Uncharacterized protein. (535 aa)
UTP7Small subunit (SSU) processome component. (553 aa)
D7B24_008005Uncharacterized protein. (162 aa)
WDR36WD repeat-containing protein 36. (1042 aa)
ECM16Putative ATP-dependent RNA helicase DHR1. (1197 aa)
RPS1740S ribosomal protein S17. (148 aa)
UTP25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (773 aa)
D7B24_006441Uncharacterized protein. (485 aa)
RRP36rRNA bioproteinsis protein rrp36. (299 aa)
DBP8Putative RNA helicase; Belongs to the DEAD box helicase family. (556 aa)
D7B24_007317Uncharacterized protein. (308 aa)
D7B24_006302RIX1 domain-containing protein. (761 aa)
cnxGMolybdopterin synthase sulfur carrier subunit; Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by UBA4. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin. (95 aa)
D7B24_007663ULP_PROTEASE domain-containing protein. (890 aa)
D7B24_006272Uncharacterized protein. (1020 aa)
NOP1Small subunit processome complex component. (325 aa)
D7B24_005721Uncharacterized protein. (303 aa)
RPS1940S ribosomal protein S19. (152 aa)
RPS5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
DIM1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (370 aa)
D7B24_00605840S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
MTR33'-5'-exoribonuclease. (291 aa)
RIOK1Serine/threonine-protein kinase RIO1. (537 aa)
NIP760S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
REXO4REX4, RNA exonuclease 4. (340 aa)
D7B24_005588Uncharacterized protein. (128 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
HHP1Casein kinase I; Belongs to the protein kinase superfamily. (393 aa)
RPS2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (93 aa)
RPS28A_140S ribosomal protein S28. (68 aa)
D7B24_005226Uncharacterized protein. (229 aa)
RPS8A40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (207 aa)
D7B24_005720Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
STS1Protein DBF8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (303 aa)
NOP58Nucleolar protein 58. (655 aa)
RRP3Ribosomal RNA processing protein; Belongs to the DEAD box helicase family. (487 aa)
SOF1rRNA-processing protein sof1. (448 aa)
RPS15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (203 aa)
RPS2040S ribosomal protein S20. (116 aa)
IMP4SnoRNA-binding rRNA-processing protein imp4. (293 aa)
RPS640S ribosomal protein S6. (257 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (288 aa)
D7B24_005317Uncharacterized protein. (231 aa)
NOB1Nin1 binding protein. (472 aa)
UTP6U3 snoRNP protein. (416 aa)
UTP20U3 snoRNP protein. (2640 aa)
XRN25'-3' exoribonuclease 2. (821 aa)
D7B24_002173Uncharacterized protein. (370 aa)
D7B24_001045Methyltransf_25 domain-containing protein. (208 aa)
BMS1Glycoside hydrolase 2 (Mannanase, beta-galactosidase). (1159 aa)
RPS18Ribosomal 40S subunit protein S18B. (228 aa)
SKI6Exosome non-catalytic core component. (265 aa)
GRC3Polynucleotide 5'-hydroxyl-kinase grc3. (743 aa)
D7B24_007521ULP_PROTEASE domain-containing protein. (748 aa)
D7B24_005912CBF domain-containing protein. (546 aa)
RPS440S ribosomal protein S4. (275 aa)
RPS2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
WDR3Dip2/Utp12 protein. (1050 aa)
D7B24_003426Uncharacterized protein. (940 aa)
RRP9Pre-rRNA processing protein. (606 aa)
D7B24_003561Uncharacterized protein. (387 aa)
RPS2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (141 aa)
D7B24_005981Uncharacterized protein. (402 aa)
D7B24_006002WD_REPEATS_REGION domain-containing protein. (598 aa)
D7B24_005089Myb-like domain-containing protein. (559 aa)
PNO1Pre-rRNA-processing protein pno1. (257 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
RRP6Exosome nuclease subunit. (841 aa)
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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