23 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_002576	Abhydrolase_3 domain-containing protein. (499 aa)
	D7B24_001387	Uncharacterized protein. (117 aa)
	ALP1_1	Basic amino-acid permease; Belongs to the peptidase S8 family. (406 aa)
	APL2	Beta-adaptin. (743 aa)
	SUB2_1	Suppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1; Belongs to the peptidase S8 family. (526 aa)
	D7B24_005376	Abhydrolase_3 domain-containing protein. (375 aa)
	SUB2_3	Suppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1; Belongs to the peptidase S8 family. (381 aa)
	D7B24_003813	Uncharacterized protein. (405 aa)
	D7B24_001469	Uncharacterized protein. (1679 aa)
	D7B24_002768	Uncharacterized protein. (423 aa)
	D7B24_005057	Abhydrolase_3 domain-containing protein. (410 aa)
	D7B24_007148	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family. (435 aa)
	D7B24_006431	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (437 aa)
	D7B24_009132	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (240 aa)
	D7B24_007818	Alpha_adaptinC2 domain-containing protein. (982 aa)
	D7B24_008359	Uncharacterized protein. (303 aa)
	D7B24_008981	SSD domain-containing protein. (1273 aa)
	D7B24_005791	Uncharacterized protein. (1325 aa)
	D7B24_006055	Uncharacterized protein. (262 aa)
	D7B24_005144	Abhydrolase_3 domain-containing protein. (360 aa)
	D7B24_004904	Abhydrolase_3 domain-containing protein. (355 aa)
	ALP1_2	Basic amino-acid permease; Belongs to the peptidase S8 family. (393 aa)
	APS2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APL2	APS2	A0A3M9Y1L2	A0A3M9Y004	Beta-adaptin.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
APL2	D7B24_001469	A0A3M9Y1L2	A0A3M9YIY0	Beta-adaptin.	Uncharacterized protein.	0.980
APL2	D7B24_006431	A0A3M9Y1L2	A0A3M9Y980	Beta-adaptin.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
APL2	D7B24_007818	A0A3M9Y1L2	A0A3M9Y6A7	Beta-adaptin.	Alpha_adaptinC2 domain-containing protein.	0.959
APL2	D7B24_009132	A0A3M9Y1L2	A0A3M9Y6Z5	Beta-adaptin.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.938
APS2	APL2	A0A3M9Y004	A0A3M9Y1L2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Beta-adaptin.	0.999
APS2	D7B24_001469	A0A3M9Y004	A0A3M9YIY0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.889
APS2	D7B24_006431	A0A3M9Y004	A0A3M9Y980	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
APS2	D7B24_007818	A0A3M9Y004	A0A3M9Y6A7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Alpha_adaptinC2 domain-containing protein.	0.995
APS2	D7B24_009132	A0A3M9Y004	A0A3M9Y6Z5	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.867
D7B24_001469	APL2	A0A3M9YIY0	A0A3M9Y1L2	Uncharacterized protein.	Beta-adaptin.	0.980
D7B24_001469	APS2	A0A3M9YIY0	A0A3M9Y004	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.889
D7B24_001469	D7B24_006431	A0A3M9YIY0	A0A3M9Y980	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.909
D7B24_001469	D7B24_007818	A0A3M9YIY0	A0A3M9Y6A7	Uncharacterized protein.	Alpha_adaptinC2 domain-containing protein.	0.837
D7B24_001469	D7B24_009132	A0A3M9YIY0	A0A3M9Y6Z5	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.999
D7B24_002576	D7B24_004904	A0A3M9Y0S7	A0A3M9YDL7	Abhydrolase_3 domain-containing protein.	Abhydrolase_3 domain-containing protein.	0.416
D7B24_004904	D7B24_002576	A0A3M9YDL7	A0A3M9Y0S7	Abhydrolase_3 domain-containing protein.	Abhydrolase_3 domain-containing protein.	0.416
D7B24_006431	APL2	A0A3M9Y980	A0A3M9Y1L2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Beta-adaptin.	0.999
D7B24_006431	APS2	A0A3M9Y980	A0A3M9Y004	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
D7B24_006431	D7B24_001469	A0A3M9Y980	A0A3M9YIY0	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.909