108 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_002395	Uncharacterized protein. (2613 aa)
	D7B24_002405	WD_REPEATS_REGION domain-containing protein. (468 aa)
	D7B24_002908	Uncharacterized protein. (749 aa)
	SEC13	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family. (356 aa)
	SCON2	E3 ubiquitin ligase complex SCF subunit scon-2. (646 aa)
	SKI8	Superkiller. (317 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	NLE1	Notchless protein 1. (515 aa)
	ELP2	Elongator subunit elp2. (828 aa)
	RBBP5	Retinoblastoma-binding protein 5. (477 aa)
	D7B24_002287	WD_REPEATS_REGION domain-containing protein. (905 aa)
	D7B24_003377	Uncharacterized protein. (1083 aa)
	D7B24_002109	Uncharacterized protein. (628 aa)
	D7B24_001952	WD_REPEATS_REGION domain-containing protein. (372 aa)
	CDC20	Ubiquitin-protein transferase activating protein. (601 aa)
	D7B24_001418	Uncharacterized protein. (826 aa)
	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family. (564 aa)
	D7B24_000959	Uncharacterized protein. (356 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	D7B24_000396	Uncharacterized protein. (729 aa)
	D7B24_002269	WD_REPEATS_REGION domain-containing protein. (356 aa)
	D7B24_002082	RING-type domain-containing protein. (1074 aa)
	HIR1	Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1056 aa)
	WDR6	WD repeat-containing protein 6. (1121 aa)
	D7B24_009626	WD_REPEATS_REGION domain-containing protein. (479 aa)
	D7B24_001313	WD_REPEATS_REGION domain-containing protein. (1192 aa)
	CDH1	Substrate-specific activator of APC-dependent proteolysis. (642 aa)
	D7B24_009062	WD_REPEATS_REGION domain-containing protein. (968 aa)
	UTP13	U3 small nucleolar RNA-associated protein 13. (906 aa)
	ASA1	ASTRA complex subunit. (380 aa)
	D7B24_008197	WD_REPEATS_REGION domain-containing protein. (1011 aa)
	D7B24_007990	WD_REPEATS_REGION domain-containing protein. (531 aa)
	FBXW7	F-box/WD repeat-containing protein 7. (673 aa)
	JIP5	WD repeat-containing protein jip5. (431 aa)
	CIAO1	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. (450 aa)
	TIF34	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (333 aa)
	D7B24_007269	Uncharacterized protein. (753 aa)
	D7B24_000063	WD_REPEATS_REGION domain-containing protein. (535 aa)
	ATG18	Autophagy-protein. (439 aa)
	SWD2	Member of Set1p complex, histone methyl transferase. (404 aa)
	UTP4	U3 small nucleolar RNA-associated protein. (911 aa)
	UTP7	Small subunit (SSU) processome component. (553 aa)
	D7B24_007691	WD_REPEATS_REGION domain-containing protein. (1478 aa)
	WDR36	WD repeat-containing protein 36. (1042 aa)
	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1. (316 aa)
	AIP1	WD40 repeat-like protein. (610 aa)
	THOC3	THO complex subunit 3. (339 aa)
	D7B24_007006	WD_REPEATS_REGION domain-containing protein. (1485 aa)
	PRP46	Pre-mRNA-splicing factor prp46. (317 aa)
	CDC4	SCF ubiquitin ligase complex subunit cdc4. (1031 aa)
	D7B24_006106	WD_REPEATS_REGION domain-containing protein. (607 aa)
	GLE2	RNA export factor gle2. (358 aa)
	MDV1	Mitochondrial fission protein. (659 aa)
	TAF5	Transcription initiation factor TFIID subunit 5. (769 aa)
	WDR33	WD repeat-containing protein 33. (674 aa)
	D7B24_005709	WD_REPEATS_REGION domain-containing protein. (719 aa)
	D7B24_006388	WD_REPEATS_REGION domain-containing protein. (1160 aa)
	VPS8	Vacuolar protein sorting-associated protein 8. (1636 aa)
	D7B24_005617	WD_REPEATS_REGION domain-containing protein. (854 aa)
	LST8	TOR complex subunit lst8. (318 aa)
	CDC55	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (481 aa)
	D7B24_005618	WD_REPEATS_REGION domain-containing protein. (403 aa)
	D7B24_005804	Uncharacterized protein. (661 aa)
	D7B24_005332	WD_REPEATS_REGION domain-containing protein. (565 aa)
	SEH1	Epoxide hydrolase, soluble (SEH); Belongs to the WD repeat SEC13 family. (438 aa)
	VPS15	Serine/threonine-protein kinase. (1543 aa)
	D7B24_005838	Zinc_ribbon_16 domain-containing protein. (1049 aa)
	SOF1	rRNA-processing protein sof1. (448 aa)
	D7B24_004711	WD_REPEATS_REGION domain-containing protein. (481 aa)
	D7B24_004504	Uncharacterized protein. (844 aa)
	D7B24_005512	Uncharacterized protein. (759 aa)
	SERAC1_2	Serine active site containing protein 1. (165 aa)
	SPT8	Transcription factor spt8. (720 aa)
	D7B24_002477	Uncharacterized protein. (771 aa)
	D7B24_001842	Uncharacterized protein. (496 aa)
	D7B24_002151	WD_REPEATS_REGION domain-containing protein. (1027 aa)
	GPB1	Guanine nucleotide-binding protein subunit beta 1. (359 aa)
	RRB1	Ribosome biosynthesis protein rrb1. (492 aa)
	D7B24_000698	WD_REPEATS_REGION domain-containing protein. (500 aa)
	D7B24_009247	WD_REPEATS_REGION domain-containing protein. (853 aa)
	WDR44	WD repeat-containing protein 44. (1051 aa)
	D7B24_005940	WD_REPEATS_REGION domain-containing protein. (1536 aa)
	D7B24_002476	Uncharacterized protein. (357 aa)
	D7B24_003486	WD_REPEATS_REGION domain-containing protein. (639 aa)
	D7B24_005037	WD_REPEATS_REGION domain-containing protein. (650 aa)
	WDR26	WD repeat-containing protein 26. (476 aa)
	D7B24_007454	IPPc domain-containing protein. (1167 aa)
	RTC1	SEA (Seh1-associated) complex subunit. (1316 aa)
	D7B24_008117	WD_REPEATS_REGION domain-containing protein. (982 aa)
	D7B24_000076	Uncharacterized protein. (692 aa)
	HAT2	Histone acetyltransferase type B subunit 2. (436 aa)
	D7B24_000128	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2902 aa)
	WDR3	Dip2/Utp12 protein. (1050 aa)
	SWD3	WD domain protein. (569 aa)
	D7B24_000165	WD_REPEATS_REGION domain-containing protein. (701 aa)
	WDR45L	WD repeat domain phosphoinositide-interacting protein 3. (377 aa)
	D7B24_007482	WD_REPEATS_REGION domain-containing protein. (1032 aa)
	D7B24_007492	Uncharacterized protein. (523 aa)
	RRP9	Pre-rRNA processing protein. (606 aa)
	D7B24_003493	WD_REPEATS_REGION domain-containing protein. (634 aa)
	D7B24_006002	WD_REPEATS_REGION domain-containing protein. (598 aa)
	D7B24_004548	WD_REPEATS_REGION domain-containing protein. (228 aa)
	WDR89	WD repeat-containing protein 89. (337 aa)
	SEC31	Protein transport protein S31. (1264 aa)
	TUP1	Proteinral transcription repressor. (626 aa)
	D7B24_002916	Uncharacterized protein. (1129 aa)
	PAK1IP1	P21-activated protein kinase-interacting protein 1-like protein. (494 aa)
	PEX7	Peroxisomal targeting signal 2 receptor. (343 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASA1	D7B24_000076	A0A3M9Y5D4	A0A3M9YKU8	ASTRA complex subunit.	Uncharacterized protein.	0.413
ASA1	D7B24_000959	A0A3M9Y5D4	A0A3M9Y1Q0	ASTRA complex subunit.	Uncharacterized protein.	0.760
ASA1	D7B24_007482	A0A3M9Y5D4	A0A3M9YLV7	ASTRA complex subunit.	WD_REPEATS_REGION domain-containing protein.	0.764
ASA1	ERB1	A0A3M9Y5D4	A0A3M9XYB3	ASTRA complex subunit.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.665
ASA1	GLE2	A0A3M9Y5D4	A0A3M9YA93	ASTRA complex subunit.	RNA export factor gle2.	0.433
ASA1	SEC13	A0A3M9Y5D4	A0A3M9XY10	ASTRA complex subunit.	GTPase-activating protein S13; Belongs to the WD repeat SEC13 family.	0.456
ASA1	SWD2	A0A3M9Y5D4	A0A3M9Y7Z2	ASTRA complex subunit.	Member of Set1p complex, histone methyl transferase.	0.616
ASA1	YTM1	A0A3M9Y5D4	A0A3M9Y1X1	ASTRA complex subunit.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.590
ATG18	VPS15	A0A3M9Y7M9	A0A3M9YDU7	Autophagy-protein.	Serine/threonine-protein kinase.	0.814
ATG18	WDR45L	A0A3M9Y7M9	A0A3M9YLL8	Autophagy-protein.	WD repeat domain phosphoinositide-interacting protein 3.	0.673
CDC20	CDC4	A0A3M9Y0J3	A0A3M9Y9N5	Ubiquitin-protein transferase activating protein.	SCF ubiquitin ligase complex subunit cdc4.	0.442
CDC20	CDC55	A0A3M9Y0J3	A0A3M9YCB5	Ubiquitin-protein transferase activating protein.	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.730
CDC20	CDH1	A0A3M9Y0J3	A0A3M9Y3T5	Ubiquitin-protein transferase activating protein.	Substrate-specific activator of APC-dependent proteolysis.	0.928
CDC20	D7B24_000076	A0A3M9Y0J3	A0A3M9YKU8	Ubiquitin-protein transferase activating protein.	Uncharacterized protein.	0.627
CDC20	D7B24_000959	A0A3M9Y0J3	A0A3M9Y1Q0	Ubiquitin-protein transferase activating protein.	Uncharacterized protein.	0.987
CDC20	D7B24_003377	A0A3M9Y0J3	A0A3M9XZI4	Ubiquitin-protein transferase activating protein.	Uncharacterized protein.	0.438
CDC20	D7B24_005512	A0A3M9Y0J3	A0A3M9YFH5	Ubiquitin-protein transferase activating protein.	Uncharacterized protein.	0.459
CDC20	D7B24_005618	A0A3M9Y0J3	A0A3M9YCF5	Ubiquitin-protein transferase activating protein.	WD_REPEATS_REGION domain-containing protein.	0.488
CDC20	D7B24_007482	A0A3M9Y0J3	A0A3M9YLV7	Ubiquitin-protein transferase activating protein.	WD_REPEATS_REGION domain-containing protein.	0.814
CDC20	ERB1	A0A3M9Y0J3	A0A3M9XYB3	Ubiquitin-protein transferase activating protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.665