4 items (Verticillium nonalfalfae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7B24_004269	Brix domain-containing protein. (420 aa)
	IMP4	SnoRNA-binding rRNA-processing protein imp4. (293 aa)
	D7B24_004177	Brix domain-containing protein. (462 aa)
	RPF2	rRNA-binding ribosome biosynthesis protein rpf2. (317 aa)

Your Current Organism:

Verticillium nonalfalfae

NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7B24_004177	D7B24_004269	A0A3M9YFX0	A0A3M9XVS6	Brix domain-containing protein.	Brix domain-containing protein.	0.979
D7B24_004177	IMP4	A0A3M9YFX0	A0A3M9YF14	Brix domain-containing protein.	SnoRNA-binding rRNA-processing protein imp4.	0.875
D7B24_004177	RPF2	A0A3M9YFX0	A0A3M9YL32	Brix domain-containing protein.	rRNA-binding ribosome biosynthesis protein rpf2.	0.949
D7B24_004269	D7B24_004177	A0A3M9XVS6	A0A3M9YFX0	Brix domain-containing protein.	Brix domain-containing protein.	0.979
D7B24_004269	IMP4	A0A3M9XVS6	A0A3M9YF14	Brix domain-containing protein.	SnoRNA-binding rRNA-processing protein imp4.	0.939
D7B24_004269	RPF2	A0A3M9XVS6	A0A3M9YL32	Brix domain-containing protein.	rRNA-binding ribosome biosynthesis protein rpf2.	0.980
IMP4	D7B24_004177	A0A3M9YF14	A0A3M9YFX0	SnoRNA-binding rRNA-processing protein imp4.	Brix domain-containing protein.	0.875
IMP4	D7B24_004269	A0A3M9YF14	A0A3M9XVS6	SnoRNA-binding rRNA-processing protein imp4.	Brix domain-containing protein.	0.939
IMP4	RPF2	A0A3M9YF14	A0A3M9YL32	SnoRNA-binding rRNA-processing protein imp4.	rRNA-binding ribosome biosynthesis protein rpf2.	0.959
RPF2	D7B24_004177	A0A3M9YL32	A0A3M9YFX0	rRNA-binding ribosome biosynthesis protein rpf2.	Brix domain-containing protein.	0.949
RPF2	D7B24_004269	A0A3M9YL32	A0A3M9XVS6	rRNA-binding ribosome biosynthesis protein rpf2.	Brix domain-containing protein.	0.980
RPF2	IMP4	A0A3M9YL32	A0A3M9YF14	rRNA-binding ribosome biosynthesis protein rpf2.	SnoRNA-binding rRNA-processing protein imp4.	0.959