39 items (Vibrio tubiashii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIW12839.1	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	mutH	DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. (221 aa)
	AIW13382.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
	seqA	Replication initiation regulator SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (179 aa)
	syd	Secretion protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family. (181 aa)
	AIW13421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIW13484.1	DedD; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AIW13485.1	Bacteriocin production protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
	AIW13509.1	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIW13512.1	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AIW13598.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AIW14126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
	AIW14132.1	Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AIW14134.1	Molybdopterin-guanine dinucleotide biosynthesis protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
	AIW14286.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	AIW14468.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	mfd	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1153 aa)
	AIW14470.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	fadR	GntR family transcriptional regulator; Multifunctional regulator of fatty acid metabolism. (279 aa)
	AIW14487.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	AIW14613.1	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AIW14660.1	Nucleoid-associated protein NdpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AIW14661.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0352 family. (74 aa)
	AIW14662.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
	AIW14774.1	Flagellar protein FlgP; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AIW14775.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AIW14776.1	Flagellar basal-body protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	AIW14855.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	AIW14932.1	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AIW15015.1	Lipoprotein NlpI; May be involved in cell division. (309 aa)
	rraB	Regulator; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (136 aa)
	AIW15188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AIW15275.1	DNA adenine methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AIW15316.1	Cell division protein FtsN; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	metJ	Met repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family. (105 aa)
	AIW15424.1	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	yihI	Aminotransferase; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. (187 aa)
	AIW15426.1	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AIW15512.1	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)

Your Current Organism:

Vibrio tubiashii

NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIW12839.1	AIW13382.1	IX91_01150	IX91_04080	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
AIW12839.1	AIW13512.1	IX91_01150	IX91_04745	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
AIW12839.1	AIW13598.1	IX91_01150	IX91_05190	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AIW12839.1	AIW14126.1	IX91_01150	IX91_07930	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AIW12839.1	AIW14132.1	IX91_01150	IX91_07960	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AIW12839.1	AIW14134.1	IX91_01150	IX91_07970	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin-guanine dinucleotide biosynthesis protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AIW12839.1	AIW14286.1	IX91_01150	IX91_08750	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AIW12839.1	AIW14468.1	IX91_01150	IX91_09670	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AIW12839.1	AIW14487.1	IX91_01150	IX91_09770	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AIW12839.1	AIW14613.1	IX91_01150	IX91_10420	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AIW12839.1	AIW14774.1	IX91_01150	IX91_11360	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlgP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AIW12839.1	AIW14775.1	IX91_01150	IX91_11365	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AIW12839.1	AIW14776.1	IX91_01150	IX91_11370	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal-body protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AIW12839.1	AIW14855.1	IX91_01150	IX91_11795	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AIW12839.1	AIW14932.1	IX91_01150	IX91_12185	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AIW12839.1	AIW15015.1	IX91_01150	IX91_12645	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein NlpI; May be involved in cell division.	0.637
AIW12839.1	AIW15188.1	IX91_01150	IX91_13635	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AIW12839.1	AIW15316.1	IX91_01150	IX91_14355	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AIW12839.1	AIW15424.1	IX91_01150	IX91_15055	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AIW12839.1	AIW15512.1	IX91_01150	IX91_15545	Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470

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