(5 nodes) Mixed, incl. IcmF-related, and Forkhead associated domain network (Vibrio tubiashii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIW13966.1	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology. (1124 aa)
	AIW13967.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	AIW13968.1	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	AIW13969.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	AIW13970.1	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)

Your Current Organism:

Vibrio tubiashii

NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIW13966.1	AIW13967.1	IX91_07100	IX91_07105	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIW13966.1	AIW13968.1	IX91_07100	IX91_07110	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AIW13966.1	AIW13969.1	IX91_07100	IX91_07115	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AIW13966.1	AIW13970.1	IX91_07100	IX91_07120	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AIW13967.1	AIW13966.1	IX91_07105	IX91_07100	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIW13967.1	AIW13968.1	IX91_07105	IX91_07110	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AIW13967.1	AIW13969.1	IX91_07105	IX91_07115	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AIW13967.1	AIW13970.1	IX91_07105	IX91_07120	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AIW13968.1	AIW13966.1	IX91_07110	IX91_07100	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AIW13968.1	AIW13967.1	IX91_07110	IX91_07105	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AIW13968.1	AIW13969.1	IX91_07110	IX91_07115	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AIW13968.1	AIW13970.1	IX91_07110	IX91_07120	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AIW13969.1	AIW13966.1	IX91_07115	IX91_07100	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AIW13969.1	AIW13967.1	IX91_07115	IX91_07105	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AIW13969.1	AIW13968.1	IX91_07115	IX91_07110	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AIW13969.1	AIW13970.1	IX91_07115	IX91_07120	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AIW13970.1	AIW13966.1	IX91_07120	IX91_07100	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AIW13970.1	AIW13967.1	IX91_07120	IX91_07105	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AIW13970.1	AIW13968.1	IX91_07120	IX91_07110	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AIW13970.1	AIW13969.1	IX91_07120	IX91_07115	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950

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