(5 nodes) Type II secretion system (T2SS), protein F, and Type II/IV secretion system protein network (Vibrio tubiashii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIW16202.1	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (441 aa)
	AIW16204.1	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AIW16205.1	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AIW16206.1	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AIW16207.1	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)

Your Current Organism:

Vibrio tubiashii

NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIW16202.1	AIW16204.1	IX91_19070	IX91_19080	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AIW16202.1	AIW16205.1	IX91_19070	IX91_19085	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AIW16202.1	AIW16206.1	IX91_19070	IX91_19090	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AIW16202.1	AIW16207.1	IX91_19070	IX91_19095	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AIW16204.1	AIW16202.1	IX91_19080	IX91_19070	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.866
AIW16204.1	AIW16205.1	IX91_19080	IX91_19085	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AIW16204.1	AIW16206.1	IX91_19080	IX91_19090	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
AIW16204.1	AIW16207.1	IX91_19080	IX91_19095	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
AIW16205.1	AIW16202.1	IX91_19085	IX91_19070	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.959
AIW16205.1	AIW16204.1	IX91_19085	IX91_19080	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AIW16205.1	AIW16206.1	IX91_19085	IX91_19090	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIW16205.1	AIW16207.1	IX91_19085	IX91_19095	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AIW16206.1	AIW16202.1	IX91_19090	IX91_19070	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.955
AIW16206.1	AIW16204.1	IX91_19090	IX91_19080	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
AIW16206.1	AIW16205.1	IX91_19090	IX91_19085	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIW16206.1	AIW16207.1	IX91_19090	IX91_19095	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AIW16207.1	AIW16202.1	IX91_19095	IX91_19070	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.964
AIW16207.1	AIW16204.1	IX91_19095	IX91_19080	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
AIW16207.1	AIW16205.1	IX91_19095	IX91_19085	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AIW16207.1	AIW16206.1	IX91_19095	IX91_19090	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977

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