(5 nodes) Bacterial extracellular solute-binding proteins, family 3 network (Vibrio tubiashii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIW13655.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AIW14511.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AIW15966.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AIW15981.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIW16226.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)

Your Current Organism:

Vibrio tubiashii

NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIW13655.1	AIW14511.1	IX91_05490	IX91_09890	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AIW13655.1	AIW15966.1	IX91_05490	IX91_17860	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AIW13655.1	AIW15981.1	IX91_05490	IX91_17935	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIW13655.1	AIW16226.1	IX91_05490	IX91_19195	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AIW14511.1	AIW13655.1	IX91_09890	IX91_05490	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AIW14511.1	AIW15966.1	IX91_09890	IX91_17860	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AIW14511.1	AIW15981.1	IX91_09890	IX91_17935	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AIW14511.1	AIW16226.1	IX91_09890	IX91_19195	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AIW15966.1	AIW13655.1	IX91_17860	IX91_05490	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AIW15966.1	AIW14511.1	IX91_17860	IX91_09890	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AIW15966.1	AIW15981.1	IX91_17860	IX91_17935	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AIW15966.1	AIW16226.1	IX91_17860	IX91_19195	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AIW15981.1	AIW13655.1	IX91_17935	IX91_05490	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIW15981.1	AIW14511.1	IX91_17935	IX91_09890	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AIW15981.1	AIW15966.1	IX91_17935	IX91_17860	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AIW15981.1	AIW16226.1	IX91_17935	IX91_19195	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AIW16226.1	AIW13655.1	IX91_19195	IX91_05490	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AIW16226.1	AIW14511.1	IX91_19195	IX91_09890	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AIW16226.1	AIW15966.1	IX91_19195	IX91_17860	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AIW16226.1	AIW15981.1	IX91_19195	IX91_17935	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724

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