(16 nodes) Type II protein secretion system complex network (Vibrio tubiashii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIW12685.1	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AIW12686.1	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
	AIW12687.1	General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (496 aa)
	AIW12689.1	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
	AIW12690.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	AIW12691.1	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
	AIW12692.1	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	AIW12693.1	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AIW12695.1	General secretion pathway protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (163 aa)
	AIW13035.1	General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa)
	AIW13349.1	Pilus assembly protein FimT; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	AIW14621.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	AIW15145.1	MSHA biogenesis protein MshD; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AIW15151.1	MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	AIW15156.1	MSHA biogenesis protein MshJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	AIW15281.1	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)

Your Current Organism:

Vibrio tubiashii

NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIW12685.1	AIW12686.1	IX91_00360	IX91_00365	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AIW12685.1	AIW12687.1	IX91_00360	IX91_00370	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.769
AIW12685.1	AIW12689.1	IX91_00360	IX91_00380	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AIW12685.1	AIW12690.1	IX91_00360	IX91_00385	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
AIW12685.1	AIW12691.1	IX91_00360	IX91_00390	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AIW12685.1	AIW12692.1	IX91_00360	IX91_00395	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AIW12685.1	AIW12693.1	IX91_00360	IX91_00400	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIW12685.1	AIW12695.1	IX91_00360	IX91_00410	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.912
AIW12685.1	AIW15145.1	IX91_00360	IX91_13420	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	MSHA biogenesis protein MshD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AIW12685.1	AIW15156.1	IX91_00360	IX91_13475	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	MSHA biogenesis protein MshJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AIW12686.1	AIW12685.1	IX91_00365	IX91_00360	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AIW12686.1	AIW12687.1	IX91_00365	IX91_00370	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.939
AIW12686.1	AIW12689.1	IX91_00365	IX91_00380	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AIW12686.1	AIW12690.1	IX91_00365	IX91_00385	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AIW12686.1	AIW12691.1	IX91_00365	IX91_00390	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AIW12686.1	AIW12692.1	IX91_00365	IX91_00395	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AIW12686.1	AIW12693.1	IX91_00365	IX91_00400	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AIW12686.1	AIW12695.1	IX91_00365	IX91_00410	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.902
AIW12686.1	AIW13035.1	IX91_00365	IX91_02260	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AIW12686.1	AIW15151.1	IX91_00365	IX91_13450	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502

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