(31 nodes) Solute-binding protein family 3/N-terminal domain of MltF network (Vibrio tubiashii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIW16226.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AIW14515.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (669 aa)
	AIW14511.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AIW14442.1	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AIW14411.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AIW14184.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AIW14013.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AIW13971.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AIW13965.1	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1048 aa)
	AIW13655.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AIW13648.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	mltF	Murein transglycosylase; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. (510 aa)
	AIW13150.1	Amino acid ABC transporter substrate-binding protein; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family. (474 aa)
	AIW12669.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AIW15966.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AIW15826.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
	AIW15698.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AIW15633.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AIW15495.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (248 aa)
	AIW15472.1	Cyclohexadienyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (258 aa)
	AIW15115.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AIW15496.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
	AIW14846.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AIW15981.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIW16110.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AIW16864.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	AIW16863.1	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AIW16814.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AIW16677.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AIW16540.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	AIW16472.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)

Your Current Organism:

Vibrio tubiashii

NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIW12669.1	AIW14846.1	IX91_00280	IX91_11750	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AIW12669.1	AIW15966.1	IX91_00280	IX91_17860	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AIW12669.1	AIW15981.1	IX91_00280	IX91_17935	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AIW12669.1	AIW16226.1	IX91_00280	IX91_19195	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
AIW12669.1	AIW16472.1	IX91_00280	IX91_20515	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AIW12669.1	AIW16677.1	IX91_00280	IX91_21600	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIW12669.1	AIW16864.1	IX91_00280	IX91_22550	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AIW13648.1	AIW13655.1	IX91_05440	IX91_05490	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AIW13648.1	AIW13971.1	IX91_05440	IX91_07125	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AIW13648.1	AIW14184.1	IX91_05440	IX91_08235	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AIW13648.1	AIW14846.1	IX91_05440	IX91_11750	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIW13648.1	AIW15698.1	IX91_05440	IX91_16495	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
AIW13648.1	AIW15966.1	IX91_05440	IX91_17860	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AIW13648.1	AIW15981.1	IX91_05440	IX91_17935	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AIW13648.1	AIW16226.1	IX91_05440	IX91_19195	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AIW13648.1	AIW16472.1	IX91_05440	IX91_20515	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AIW13648.1	AIW16677.1	IX91_05440	IX91_21600	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
AIW13648.1	AIW16864.1	IX91_05440	IX91_22550	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AIW13655.1	AIW13648.1	IX91_05490	IX91_05440	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AIW13655.1	AIW14184.1	IX91_05490	IX91_08235	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762

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