STRINGSTRING
oppB-2 oppB-2 AIW16414.1 AIW16414.1 AIW16477.1 AIW16477.1 AIW16502.1 AIW16502.1 AIW16792.1 AIW16792.1 AIW16794.1 AIW16794.1 AIW16858.1 AIW16858.1 AIW16870.1 AIW16870.1 AIW16919.1 AIW16919.1 AIW16928.1 AIW16928.1 AIW16972.1 AIW16972.1 AIW16976.1 AIW16976.1 AIW17009.1 AIW17009.1 AIW17045.1 AIW17045.1 AIW14023.1 AIW14023.1 AIW16503.1 AIW16503.1 AIW16547.1 AIW16547.1 AIW16566.1 AIW16566.1 AIW16569.1 AIW16569.1 AIW16631.1 AIW16631.1 AIW16675.1 AIW16675.1 AIW16689.1 AIW16689.1 AIW16713.1 AIW16713.1 AIW16728.1 AIW16728.1 AIW16757.1 AIW16757.1 AIW16791.1 AIW16791.1 AIW13939.1 AIW13939.1 AIW13786.1 AIW13786.1 AIW13784.1 AIW13784.1 AIW13757.1 AIW13757.1 AIW13558.1 AIW13558.1 AIW13394.1 AIW13394.1 AIW13241.1 AIW13241.1 secF secF AIW15446.1 AIW15446.1 AIW15413.1 AIW15413.1 AIW15412.1 AIW15412.1 AIW15411.1 AIW15411.1 AIW15388.1 AIW15388.1 AIW15359.1 AIW15359.1 AIW15336.1 AIW15336.1 AIW15270.1 AIW15270.1 secE secE rpoB rpoB rpoC rpoC AIW15207.1 AIW15207.1 msrA msrA AIW15007.1 AIW15007.1 secA secA AIW14923.1 AIW14923.1 ribD ribD AIW14802.1 AIW14802.1 AIW14727.1 AIW14727.1 AIW14683.1 AIW14683.1 AIW14680.1 AIW14680.1 AIW14540.1 AIW14540.1 AIW14521.1 AIW14521.1 oppB oppB AIW14494.1 AIW14494.1 AIW14485.1 AIW14485.1 msbA msbA AIW14349.1 AIW14349.1 AIW14334.1 AIW14334.1 AIW14232.1 AIW14232.1 AIW14217.1 AIW14217.1 secD secD AIW13222.1 AIW13222.1 AIW13209.1 AIW13209.1 AIW13182.1 AIW13182.1 AIW13181.1 AIW13181.1 AIW13180.1 AIW13180.1 ndk ndk AIW13079.1 AIW13079.1 AIW13078.1 AIW13078.1 AIW13077.1 AIW13077.1 aceF aceF AIW12919.1 AIW12919.1 rpoA rpoA secY secY rpoZ rpoZ AIW16177.1 AIW16177.1 AIW16116.1 AIW16116.1 AIW16114.1 AIW16114.1 katG katG msrA-2 msrA-2 AIW13973.1 AIW13973.1 AIW16057.1 AIW16057.1 secF-2 secF-2 secD-2 secD-2 AIW15950.1 AIW15950.1 AIW15862.1 AIW15862.1 AIW15839.1 AIW15839.1 AIW15801.1 AIW15801.1 AIW15783.1 AIW15783.1 AIW15669.1 AIW15669.1 AIW15600.1 AIW15600.1 AIW15563.1 AIW15563.1 AIW15538.1 AIW15538.1 AIW15517.1 AIW15517.1 AIW15471.1 AIW15471.1 AIW15454.1 AIW15454.1 AIW15452.1 AIW15452.1 AIW16183.1 AIW16183.1 AIW16191.1 AIW16191.1 AIW16209.1 AIW16209.1 AIW16211.1 AIW16211.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oppB-2Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
AIW16414.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
AIW16477.1Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (530 aa)
AIW16502.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
AIW16792.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
AIW16794.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
AIW16858.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
AIW16870.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
AIW16919.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
AIW16928.1Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
AIW16972.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
AIW16976.1Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (152 aa)
AIW17009.1Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
AIW17045.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
AIW14023.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
AIW16503.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
AIW16547.1Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
AIW16566.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
AIW16569.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
AIW16631.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
AIW16675.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
AIW16689.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
AIW16713.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
AIW16728.1Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
AIW16757.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
AIW16791.1Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
AIW13939.1MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
AIW13786.1Membrane associated secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
AIW13784.1Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
AIW13757.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
AIW13558.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
AIW13394.1Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (402 aa)
AIW13241.1Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
secFPreprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (315 aa)
AIW15446.1Ferritin; Iron-storage protein. (175 aa)
AIW15413.1Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
AIW15412.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
AIW15411.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
AIW15388.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (108 aa)
AIW15359.1MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
AIW15336.1Catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione; also catalyzes the formation of aldehyde or ketone from alcohols; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (382 aa)
AIW15270.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (202 aa)
secEPreprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. (126 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1342 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1401 aa)
AIW15207.1Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (160 aa)
msrAMethionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (208 aa)
AIW15007.1Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (110 aa)
secAPreprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (909 aa)
AIW14923.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
ribD5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (368 aa)
AIW14802.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
AIW14727.1Bacterioferritin comigratory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
AIW14683.1Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (149 aa)
AIW14680.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (194 aa)
AIW14540.1DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (515 aa)
AIW14521.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
oppBOligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
AIW14494.1Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
AIW14485.1Leucine-responsive transcriptional regulator; Mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
msbALipid transporter ATP-binding/permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (582 aa)
AIW14349.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
AIW14334.1Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
AIW14232.1Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
AIW14217.1Ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
secDPreprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (607 aa)
AIW13222.1Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
AIW13209.1Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (185 aa)
AIW13182.1Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
AIW13181.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
AIW13180.1Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
ndkNucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (141 aa)
AIW13079.1Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
AIW13078.1Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
AIW13077.1Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
aceFPyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (632 aa)
AIW12919.1Toluene ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (330 aa)
secYPreprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (444 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (90 aa)
AIW16177.1Tyrosine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (148 aa)
AIW16116.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
AIW16114.1Siderophore-interacting protein ViuB; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
katGPeroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (725 aa)
msrA-2Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (161 aa)
AIW13973.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (847 aa)
AIW16057.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
secF-2Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (300 aa)
secD-2Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (615 aa)
AIW15950.1Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
AIW15862.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
AIW15839.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
AIW15801.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
AIW15783.1Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
AIW15669.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
AIW15600.1Multidrug transporter; Confers resistance to chloramphenicol; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
AIW15563.1Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
AIW15538.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
AIW15517.1Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
AIW15471.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
AIW15454.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
AIW15452.1Transcriptional repressor of asnA which codes for aspartate-ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
AIW16183.1Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (540 aa)
AIW16191.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
AIW16209.1Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
AIW16211.1Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
Your Current Organism:
Vibrio tubiashii
NCBI taxonomy Id: 1051646
Other names: V. tubiashii ATCC 19109, Vibrio tubiashii ATCC 19109, Vibrio tubiashii LMG 10396, Vibrio tubiashii NBRC 15644, Vibrio tubiashii str. ATCC 19109, Vibrio tubiashii strain ATCC 19109
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