6 items (Terfezia boudieri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3N4LAD2	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	A0A3N4LCT7	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	A0A3N4LEZ8	Uncharacterized protein. (351 aa)
	A0A3N4M369	Translational machinery component. (128 aa)
	A0A3N4M3J4	Uncharacterized protein. (116 aa)
	A0A3N4M7J6	Ribosomal protein S18. (246 aa)

Your Current Organism:

Terfezia boudieri

NCBI taxonomy Id: 1051890
Other names: T. boudieri ATCC MYA-4762, Terfezia boudieri ATCC MYA-4762, Terfezia boudieri S1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3N4LAD2	A0A3N4LCT7	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
A0A3N4LAD2	A0A3N4M369	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Translational machinery component.	0.989
A0A3N4LAD2	A0A3N4M3J4	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.996
A0A3N4LAD2	A0A3N4M7J6	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein S18.	0.984
A0A3N4LCT7	A0A3N4LAD2	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
A0A3N4LCT7	A0A3N4LEZ8	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	Uncharacterized protein.	0.683
A0A3N4LCT7	A0A3N4M3J4	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	Uncharacterized protein.	0.997
A0A3N4LCT7	A0A3N4M7J6	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	Ribosomal protein S18.	0.983
A0A3N4LEZ8	A0A3N4LCT7	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.683
A0A3N4LEZ8	A0A3N4M369	Uncharacterized protein.	Translational machinery component.	0.636
A0A3N4M369	A0A3N4LAD2	Translational machinery component.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.989
A0A3N4M369	A0A3N4LEZ8	Translational machinery component.	Uncharacterized protein.	0.636
A0A3N4M369	A0A3N4M3J4	Translational machinery component.	Uncharacterized protein.	0.999
A0A3N4M369	A0A3N4M7J6	Translational machinery component.	Ribosomal protein S18.	0.997
A0A3N4M3J4	A0A3N4LAD2	Uncharacterized protein.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.996
A0A3N4M3J4	A0A3N4LCT7	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.997
A0A3N4M3J4	A0A3N4M369	Uncharacterized protein.	Translational machinery component.	0.999
A0A3N4M3J4	A0A3N4M7J6	Uncharacterized protein.	Ribosomal protein S18.	0.996
A0A3N4M7J6	A0A3N4LAD2	Ribosomal protein S18.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.984
A0A3N4M7J6	A0A3N4LCT7	Ribosomal protein S18.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.983