(50 nodes) Mixed, incl. Peptide transport, and Ligand-gated channel activity network (Bacillus subtilis spizizenii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GYO_0545	YckA. (226 aa)
	GYO_0546	YckB; Belongs to the bacterial solute-binding protein 3 family. (283 aa)
	GYO_0574	YckI. (247 aa)
	GYO_0575	Putative amino-acid ABC transporter permease protein YckJ. (234 aa)
	GYO_0576	Putative amino-acid ABC transporter extracellular-binding protein yckKprecursor; Belongs to the bacterial solute-binding protein 3 family. (268 aa)
	GYO_1201	Putative symporter YdjN; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (463 aa)
	GYO_1361	YhjN. (384 aa)
	GYO_1362	Peptide permease. (400 aa)
	GYO_1363	Oligopeptide ABC transporter, substrate-binding protein. (575 aa)
	GYO_1364	Hypothetical protein. (91 aa)
	GYO_1440	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily. (328 aa)
	GYO_1441	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (329 aa)
	GYO_1442	Oligopeptide-binding protein AppA. (542 aa)
	GYO_1443	Oligopeptide transport system permease protein AppB. (316 aa)
	GYO_1444	Oligopeptide transport system permease protein AppC. (304 aa)
	oppA	Oligopeptide-binding protein OppA. (545 aa)
	oppB	Oligopeptide transport system permease protein OppB. (311 aa)
	oppC	Oligopeptide transport system permease protein OppC. (305 aa)
	oppD	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (355 aa)
	oppF	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (305 aa)
	GYO_1611	D-aminopeptidase. (274 aa)
	GYO_1612	Dipeptide transport system permease protein DppB. (308 aa)
	GYO_1613	Dipeptide transport system permease protein DppC. (320 aa)
	GYO_1614	Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily. (335 aa)
	GYO_1615	Dipeptide-binding protein DppE. (551 aa)
	GYO_1616	YkfA. (319 aa)
	GYO_1617	YkfB. (366 aa)
	GYO_1618	YkfC. (296 aa)
	GYO_1619	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (329 aa)
	GYO_2268	Beta-lactamase. (304 aa)
	GYO_2636	Peptidase, M20/M25/M40 family. (371 aa)
	GYO_2637	propionyl-CoA carboxylase. (509 aa)
	mce	methylmalonyl-CoA epimerase. (140 aa)
	GYO_2639	Protein ErfK/srfK. (176 aa)
	GYO_2640	YqjA. (322 aa)
	GYO_2641	YqiZ. (240 aa)
	GYO_2642	YqiY. (219 aa)
	GYO_2643	Amino acid abc transporter, amino acid-binding protein. (255 aa)
	GYO_4354	MmgE/PrpD family. (445 aa)
	GYO_4355	Amidohydrolase subfamily. (380 aa)
	GYO_4356	Putative amino-acid ABC transporter ATP-binding protein YtmN. (249 aa)
	GYO_4357	Amino acid ABC transporter, permease protein. (224 aa)
	GYO_4358	Amino acid ABC transporter, periplasmic amino acid-binding portion; Belongs to the bacterial solute-binding protein 3 family. (275 aa)
	GYO_4359	Acetyltransferase, GNAT family. (165 aa)
	GYO_4360	Nitrilotriacetate monooxygenase component A. (441 aa)
	GYO_4361	Penicillin acylase. (328 aa)
	GYO_4362	Cof-like hydrolase family protein. (270 aa)
	GYO_4363	YxeG. (186 aa)
	GYO_4364	Lipoprotein, putative. (141 aa)
	yxeD	Sporulation protein YxeD. (117 aa)

Your Current Organism:

Bacillus subtilis spizizenii

NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GYO_0545	GYO_0546	GYO_0545	GYO_0546	YckA.	YckB; Belongs to the bacterial solute-binding protein 3 family.	0.998
GYO_0545	GYO_0574	GYO_0545	GYO_0574	YckA.	YckI.	0.985
GYO_0545	GYO_0575	GYO_0545	GYO_0575	YckA.	Putative amino-acid ABC transporter permease protein YckJ.	0.909
GYO_0545	GYO_0576	GYO_0545	GYO_0576	YckA.	Putative amino-acid ABC transporter extracellular-binding protein yckKprecursor; Belongs to the bacterial solute-binding protein 3 family.	0.987
GYO_0545	GYO_1442	GYO_0545	GYO_1442	YckA.	Oligopeptide-binding protein AppA.	0.400
GYO_0545	GYO_2641	GYO_0545	GYO_2641	YckA.	YqiZ.	0.924
GYO_0545	GYO_2642	GYO_0545	GYO_2642	YckA.	YqiY.	0.490
GYO_0545	GYO_2643	GYO_0545	GYO_2643	YckA.	Amino acid abc transporter, amino acid-binding protein.	0.984
GYO_0545	GYO_4356	GYO_0545	GYO_4356	YckA.	Putative amino-acid ABC transporter ATP-binding protein YtmN.	0.928
GYO_0545	GYO_4357	GYO_0545	GYO_4357	YckA.	Amino acid ABC transporter, permease protein.	0.436
GYO_0545	GYO_4358	GYO_0545	GYO_4358	YckA.	Amino acid ABC transporter, periplasmic amino acid-binding portion; Belongs to the bacterial solute-binding protein 3 family.	0.966
GYO_0546	GYO_0545	GYO_0546	GYO_0545	YckB; Belongs to the bacterial solute-binding protein 3 family.	YckA.	0.998
GYO_0546	GYO_0574	GYO_0546	GYO_0574	YckB; Belongs to the bacterial solute-binding protein 3 family.	YckI.	0.964
GYO_0546	GYO_0575	GYO_0546	GYO_0575	YckB; Belongs to the bacterial solute-binding protein 3 family.	Putative amino-acid ABC transporter permease protein YckJ.	0.976
GYO_0546	GYO_0576	GYO_0546	GYO_0576	YckB; Belongs to the bacterial solute-binding protein 3 family.	Putative amino-acid ABC transporter extracellular-binding protein yckKprecursor; Belongs to the bacterial solute-binding protein 3 family.	0.916
GYO_0546	GYO_2641	GYO_0546	GYO_2641	YckB; Belongs to the bacterial solute-binding protein 3 family.	YqiZ.	0.811
GYO_0546	GYO_2642	GYO_0546	GYO_2642	YckB; Belongs to the bacterial solute-binding protein 3 family.	YqiY.	0.841
GYO_0546	GYO_4356	GYO_0546	GYO_4356	YckB; Belongs to the bacterial solute-binding protein 3 family.	Putative amino-acid ABC transporter ATP-binding protein YtmN.	0.795
GYO_0546	GYO_4357	GYO_0546	GYO_4357	YckB; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter, permease protein.	0.849
GYO_0574	GYO_0545	GYO_0574	GYO_0545	YckI.	YckA.	0.985

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