(10 nodes) Peptide transport network (Bacillus subtilis spizizenii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Others

textmining

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protein homology

Your Input:
	GYO_1440	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily. (328 aa)
	GYO_1441	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (329 aa)
	GYO_1442	Oligopeptide-binding protein AppA. (542 aa)
	GYO_1443	Oligopeptide transport system permease protein AppB. (316 aa)
	GYO_1444	Oligopeptide transport system permease protein AppC. (304 aa)
	oppA	Oligopeptide-binding protein OppA. (545 aa)
	oppB	Oligopeptide transport system permease protein OppB. (311 aa)
	oppC	Oligopeptide transport system permease protein OppC. (305 aa)
	oppD	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (355 aa)
	oppF	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (305 aa)

Your Current Organism:

Bacillus subtilis spizizenii

NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GYO_1440	GYO_1441	GYO_1440	GYO_1441	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	0.990
GYO_1440	GYO_1442	GYO_1440	GYO_1442	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide-binding protein AppA.	0.989
GYO_1440	GYO_1443	GYO_1440	GYO_1443	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppB.	0.998
GYO_1440	GYO_1444	GYO_1440	GYO_1444	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppC.	0.999
GYO_1440	oppA	GYO_1440	GYO_1447	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide-binding protein OppA.	0.719
GYO_1440	oppB	GYO_1440	GYO_1448	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein OppB.	0.887
GYO_1440	oppC	GYO_1440	GYO_1449	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein OppC.	0.977
GYO_1440	oppF	GYO_1440	GYO_1451	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.669
GYO_1441	GYO_1440	GYO_1441	GYO_1440	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	0.990
GYO_1441	GYO_1442	GYO_1441	GYO_1442	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide-binding protein AppA.	0.987
GYO_1441	GYO_1443	GYO_1441	GYO_1443	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppB.	0.999
GYO_1441	GYO_1444	GYO_1441	GYO_1444	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein AppC.	0.999
GYO_1441	oppA	GYO_1441	GYO_1447	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide-binding protein OppA.	0.792
GYO_1441	oppB	GYO_1441	GYO_1448	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein OppB.	0.891
GYO_1441	oppC	GYO_1441	GYO_1449	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein OppC.	0.964
GYO_1441	oppF	GYO_1441	GYO_1451	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.632
GYO_1442	GYO_1440	GYO_1442	GYO_1440	Oligopeptide-binding protein AppA.	Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.	0.989
GYO_1442	GYO_1441	GYO_1442	GYO_1441	Oligopeptide-binding protein AppA.	Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	0.987
GYO_1442	GYO_1443	GYO_1442	GYO_1443	Oligopeptide-binding protein AppA.	Oligopeptide transport system permease protein AppB.	0.996
GYO_1442	GYO_1444	GYO_1442	GYO_1444	Oligopeptide-binding protein AppA.	Oligopeptide transport system permease protein AppC.	0.995

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