(46 nodes) Mixed, incl. Glycine betaine transport, and Potassium ion transport network (Bacillus subtilis spizizenii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GYO_0432	Proton glutamate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (414 aa)
	GYO_0440	Amino acid carrier protein AlsT. (478 aa)
	GYO_0502	Glycine betaine transport ATP-binding protein opuAA. (418 aa)
	GYO_0503	Glycine betaine transport system permease protein opuAB. (282 aa)
	GYO_0504	Glycine betaine-binding protein. (293 aa)
	GYO_0528	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (476 aa)
	GYO_0529	YcgP. (411 aa)
	GYO_0650	Hypothetical protein. (607 aa)
	GYO_0653	Hypothetical protein. (66 aa)
	GYO_0928	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (492 aa)
	GYO_1320	Proton/sodium-glutamate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (429 aa)
	GYO_1322	YhfI. (244 aa)
	GYO_1675	YkrM. (449 aa)
	GYO_1787	TrkA-N domain family. (221 aa)
	GYO_2336	YocR; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (445 aa)
	bass	Bile acid transporter family protein. (321 aa)
	GYO_3020	Hypothetical protein. (40 aa)
	GYO_3021	Sodium:alanine symporter. (484 aa)
	GYO_3255	Glycine betaine transporter OpuD; Belongs to the BCCT transporter (TC 2.A.15) family. (146 aa)
	GYO_3382	YuaD. (193 aa)
	GYO_3383	Alcohol dehydrogenase. (402 aa)
	betB	Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (490 aa)
	GYO_3385	YuaC; Belongs to the GbsR family. (180 aa)
	GYO_3387	Potassium transport system NAD-binding component. (222 aa)
	GYO_3388	Cation transport protein, putative. (445 aa)
	GYO_3412	Hypothetical protein. (84 aa)
	GYO_3414	Conserved hypothetical protein. (132 aa)
	GYO_3416	YugS. (430 aa)
	GYO_3417	YugP. (225 aa)
	GYO_3418	Conserved hypothetical protein. (87 aa)
	GYO_3419	Mistic. (110 aa)
	GYO_3420	YugO. (328 aa)
	GYO_3654	Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (670 aa)
	GYO_3697	Choline transport system permease protein opuBD. (223 aa)
	GYO_3698	Choline-binding protein. (306 aa)
	GYO_3699	Choline transport system permease protein opuBB. (217 aa)
	GYO_3700	Choline transport ATP-binding protein opuBA. (381 aa)
	GYO_3701	Hypothetical protein. (41 aa)
	GYO_3702	Conserved hypothetical protein; Belongs to the GbsR family. (177 aa)
	GYO_3703	Glycine betaine/carnitine/choline transport system permease proteinopuCD. (222 aa)
	GYO_3704	Glycine betaine/carnitine/choline-binding protein. (305 aa)
	GYO_3705	Glycine betaine/carnitine/choline transport system permease proteinopuCB. (217 aa)
	GYO_3706	Glycine betaine/carnitine/choline transport ATP-binding protein opuCA. (379 aa)
	GYO_3707	Conserved hypothetical protein; Belongs to the GbsR family. (185 aa)
	GYO_4288	YxkD. (278 aa)
	GYO_4405	Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (525 aa)

Your Current Organism:

Bacillus subtilis spizizenii

NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GYO_0432	GYO_0440	GYO_0432	GYO_0440	Proton glutamate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	Amino acid carrier protein AlsT.	0.405
GYO_0440	GYO_0432	GYO_0440	GYO_0432	Amino acid carrier protein AlsT.	Proton glutamate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	0.405
GYO_0502	GYO_0503	GYO_0502	GYO_0503	Glycine betaine transport ATP-binding protein opuAA.	Glycine betaine transport system permease protein opuAB.	0.999
GYO_0502	GYO_0504	GYO_0502	GYO_0504	Glycine betaine transport ATP-binding protein opuAA.	Glycine betaine-binding protein.	0.999
GYO_0503	GYO_0502	GYO_0503	GYO_0502	Glycine betaine transport system permease protein opuAB.	Glycine betaine transport ATP-binding protein opuAA.	0.999
GYO_0503	GYO_0504	GYO_0503	GYO_0504	Glycine betaine transport system permease protein opuAB.	Glycine betaine-binding protein.	0.999
GYO_0504	GYO_0502	GYO_0504	GYO_0502	Glycine betaine-binding protein.	Glycine betaine transport ATP-binding protein opuAA.	0.999
GYO_0504	GYO_0503	GYO_0504	GYO_0503	Glycine betaine-binding protein.	Glycine betaine transport system permease protein opuAB.	0.999
GYO_0504	GYO_3255	GYO_0504	GYO_3255	Glycine betaine-binding protein.	Glycine betaine transporter OpuD; Belongs to the BCCT transporter (TC 2.A.15) family.	0.499
GYO_0504	GYO_3698	GYO_0504	GYO_3698	Glycine betaine-binding protein.	Choline-binding protein.	0.452
GYO_0504	GYO_3704	GYO_0504	GYO_3704	Glycine betaine-binding protein.	Glycine betaine/carnitine/choline-binding protein.	0.465
GYO_0528	GYO_0529	GYO_0528	GYO_0529	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	YcgP.	0.724
GYO_0528	GYO_3255	GYO_0528	GYO_3255	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Glycine betaine transporter OpuD; Belongs to the BCCT transporter (TC 2.A.15) family.	0.593
GYO_0529	GYO_0528	GYO_0529	GYO_0528	YcgP.	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.724
GYO_0529	GYO_0928	GYO_0529	GYO_0928	YcgP.	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.410
GYO_0650	GYO_1787	GYO_0650	GYO_1787	Hypothetical protein.	TrkA-N domain family.	0.758
GYO_0650	GYO_3387	GYO_0650	GYO_3387	Hypothetical protein.	Potassium transport system NAD-binding component.	0.933
GYO_0650	GYO_3420	GYO_0650	GYO_3420	Hypothetical protein.	YugO.	0.403
GYO_0650	GYO_3654	GYO_0650	GYO_3654	Hypothetical protein.	Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.400
GYO_0650	GYO_4288	GYO_0650	GYO_4288	Hypothetical protein.	YxkD.	0.713

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