STRINGSTRING
GYO_1442 GYO_1442 oppA oppA GYO_1615 GYO_1615 GYO_1645 GYO_1645 GYO_1835 GYO_1835 GYO_1881 GYO_1881 GYO_1889 GYO_1889 fliI fliI GYO_2228 GYO_2228 GYO_2229 GYO_2229 GYO_2411 GYO_2411 GYO_2642 GYO_2642 GYO_3328 GYO_3328 mntC mntC GYO_3330 GYO_3330 GYO_3555 GYO_3555 GYO_3698 GYO_3698 GYO_3704 GYO_3704 GYO_3740 GYO_3740 GYO_3747 GYO_3747 GYO_3748 GYO_3748 GYO_3794 GYO_3794 GYO_3795 GYO_3795 tagG tagG atpC atpC atpD atpD atpG atpG atpA atpA atpH atpH atpF atpF atpE atpE atpB atpB GYO_4063 GYO_4063 qoxD qoxD qoxC qoxC GYO_4222 GYO_4222 GYO_4285 GYO_4285 GYO_4357 GYO_4357 GYO_4423 GYO_4423 yveK yveK tatAd tatAd tatCd tatCd GYO_0489 GYO_0489 GYO_0503 GYO_0503 GYO_0504 GYO_0504 GYO_0545 GYO_0545 GYO_0575 GYO_0575 tatAy tatAy tatCy tatCy GYO_1101 GYO_1101 GYO_1102 GYO_1102
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GYO_1442Oligopeptide-binding protein AppA. (542 aa)
oppAOligopeptide-binding protein OppA. (545 aa)
GYO_1615Dipeptide-binding protein DppE. (551 aa)
GYO_1645YkoD. (546 aa)
GYO_1835cytoChrome c oxidase subunit 3. (207 aa)
GYO_1881ABC transporter family protein. (264 aa)
GYO_1889S4 domain protein. (257 aa)
fliIFlagellar protein export ATPase FliI. (427 aa)
GYO_2228ABC-type MDR transport system, permease component. (330 aa)
GYO_2229ABC-type MDR transport system, permease component. (248 aa)
GYO_2411YpgR. (377 aa)
GYO_2642YqiY. (219 aa)
GYO_3328Manganese transport system membrane protein MntD. (295 aa)
mntCManganese transport system membrane protein MntC. (435 aa)
GYO_3330Manganese transport system ATP-binding protein MntB. (250 aa)
GYO_3555Putative ABC transporter ATP-binding protein YcjV; Belongs to the ABC transporter superfamily. (367 aa)
GYO_3698Choline-binding protein. (306 aa)
GYO_3704Glycine betaine/carnitine/choline-binding protein. (305 aa)
GYO_3740ABC transporter permease protein. (245 aa)
GYO_3747YvfL. (418 aa)
GYO_3748YvfK. (421 aa)
GYO_3794YvdH. (435 aa)
GYO_3795YvdG. (417 aa)
tagGTeichoic acid translocation permease protein TagG. (275 aa)
atpCATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (132 aa)
atpDATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (473 aa)
atpGATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (287 aa)
atpAATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (502 aa)
atpHATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. (181 aa)
atpFATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (170 aa)
atpEATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (70 aa)
atpBATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. (244 aa)
GYO_4063ATP synthase protein I. (127 aa)
qoxDCytochrome aa3 quinol oxidase, subunit IV. (124 aa)
qoxCCytochrome aa3 quinol oxidase, subunit III. (204 aa)
GYO_4222Ferrous iron permease efeU. (481 aa)
GYO_4285Multiple sugar-binding transport ATP-binding protein MsmK; Belongs to the ABC transporter superfamily. (365 aa)
GYO_4357Amino acid ABC transporter, permease protein. (224 aa)
GYO_4423ABC transporter, ATP-binding protein. (209 aa)
yveKCobalt import ATP-binding protein CbiO 1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (281 aa)
tatAdSec-independent protein translocase protein TatAd; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (70 aa)
tatCdSec-independent protein translocase protein TatCd; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (241 aa)
GYO_0489Zinc uptake system ATP-binding protein zurA. (231 aa)
GYO_0503Glycine betaine transport system permease protein opuAB. (282 aa)
GYO_0504Glycine betaine-binding protein. (293 aa)
GYO_0545YckA. (226 aa)
GYO_0575Putative amino-acid ABC transporter permease protein YckJ. (234 aa)
tatAySec-independent protein translocase protein TatAy; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (57 aa)
tatCyTwin arginine-targeting protein translocase TatCy; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (251 aa)
GYO_1101ABC-2 type transporter family. (396 aa)
GYO_1102ABC-2 type transporter family. (383 aa)
Your Current Organism:
Bacillus subtilis spizizenii
NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10
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