(22 nodes) HAD superfamily network (Bacillus subtilis spizizenii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GYO_4362	Cof-like hydrolase family protein. (270 aa)
	GYO_3992	YwpJ. (285 aa)
	GYO_3944	YwtE. (286 aa)
	ppaX	Pyrophosphatase PpaX; Hydrolyzes pyrophosphate formed during P-Ser-HPr dephosphorylation by HPrK/P. Might play a role in controlling the intracellular pyrophosphate pool. (216 aa)
	pgmB	Beta-phosphoglucomutase. (224 aa)
	GYO_3663	Copper-translocating P-type ATPase. (803 aa)
	GYO_3662	Cadmium-translocating P-type ATPase. (699 aa)
	GYO_3522	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family. (256 aa)
	GYO_3144	YsaA. (260 aa)
	GYO_3127	Arabinose operon protein AraL. (269 aa)
	GYO_2887	Copper-translocating P-type ATPase. (812 aa)
	yqeG	Had superfamily (subfamily iiia) phosphatase. (172 aa)
	GYO_2773	Putative nucleotidase; Belongs to the 5'(3')-deoxyribonucleotidase family. (193 aa)
	GYO_1914	E1-E2 ATPase subfamily, putative. (890 aa)
	GYO_1792	YkrA. (257 aa)
	GYO_1717	Cadmium-translocating P-type ATPase. (637 aa)
	mtnX	2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase; Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene). (235 aa)
	GYO_1416	YitU. (270 aa)
	GYO_1358	YhjK. (281 aa)
	yhaX	Spore coat and stress response protein YhaX. (288 aa)
	GYO_1211	YhcW. (220 aa)
	GYO_0622	YcsE. (249 aa)

Your Current Organism:

Bacillus subtilis spizizenii

NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GYO_0622	GYO_1416	GYO_0622	GYO_1416	YcsE.	YitU.	0.927
GYO_0622	GYO_3522	GYO_0622	GYO_3522	YcsE.	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	0.749
GYO_0622	GYO_3944	GYO_0622	GYO_3944	YcsE.	YwtE.	0.918
GYO_1416	GYO_0622	GYO_1416	GYO_0622	YitU.	YcsE.	0.927
GYO_1416	GYO_3522	GYO_1416	GYO_3522	YitU.	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	0.454
GYO_1416	GYO_3944	GYO_1416	GYO_3944	YitU.	YwtE.	0.931
GYO_1717	GYO_3663	GYO_1717	GYO_3663	Cadmium-translocating P-type ATPase.	Copper-translocating P-type ATPase.	0.575
GYO_1914	GYO_3663	GYO_1914	GYO_3663	E1-E2 ATPase subfamily, putative.	Copper-translocating P-type ATPase.	0.429
GYO_2887	GYO_3663	GYO_2887	GYO_3663	Copper-translocating P-type ATPase.	Copper-translocating P-type ATPase.	0.487
GYO_3144	GYO_3522	GYO_3144	GYO_3522	YsaA.	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	0.742
GYO_3522	GYO_0622	GYO_3522	GYO_0622	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	YcsE.	0.749
GYO_3522	GYO_1416	GYO_3522	GYO_1416	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	YitU.	0.454
GYO_3522	GYO_3144	GYO_3522	GYO_3144	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	YsaA.	0.742
GYO_3522	GYO_3944	GYO_3522	GYO_3944	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	YwtE.	0.439
GYO_3522	yqeG	GYO_3522	GYO_2838	HAD-superfamily subfamily IIA hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.	Had superfamily (subfamily iiia) phosphatase.	0.459
GYO_3662	GYO_3663	GYO_3662	GYO_3663	Cadmium-translocating P-type ATPase.	Copper-translocating P-type ATPase.	0.766
GYO_3663	GYO_1717	GYO_3663	GYO_1717	Copper-translocating P-type ATPase.	Cadmium-translocating P-type ATPase.	0.575
GYO_3663	GYO_1914	GYO_3663	GYO_1914	Copper-translocating P-type ATPase.	E1-E2 ATPase subfamily, putative.	0.429
GYO_3663	GYO_2887	GYO_3663	GYO_2887	Copper-translocating P-type ATPase.	Copper-translocating P-type ATPase.	0.487
GYO_3663	GYO_3662	GYO_3663	GYO_3662	Copper-translocating P-type ATPase.	Cadmium-translocating P-type ATPase.	0.766

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About