STRINGSTRING
metC metC GYO_1685 GYO_1685 yrhB yrhB patB patB GYO_3758 GYO_3758 glyA glyA GYO_4155 GYO_4155 GYO_0346 GYO_0346 spsC spsC GYO_1237 GYO_1237 GYO_1359 GYO_1359 argD argD GYO_0605 GYO_0605 GYO_0753 GYO_0753 GYO_0770 GYO_0770
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
metCCystathionine beta-lyase. (390 aa)
GYO_1685Putative aspartate aminotransferase. (397 aa)
yrhBPutative cystathionine gamma-synthase. (379 aa)
patBAminotransferase, class II. (387 aa)
GYO_3758Perosamine synthetase, putative; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (415 aa)
GYO_4155Transaminase MtnE. (399 aa)
GYO_0346Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (422 aa)
spsCSpore coat polysaccharide biosynthesis protein and putative transaminase SpsC; Belongs to the DegT/DnrJ/EryC1 family. (389 aa)
GYO_1237YdeL. (469 aa)
GYO_1359NTD biosynthesis operon protein NtdA; Belongs to the DegT/DnrJ/EryC1 family. (441 aa)
argDAcetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (385 aa)
GYO_0605Transcriptional regulator. (479 aa)
GYO_0753YdeL. (463 aa)
GYO_0770Transcriptional regulator, GntR family. (482 aa)
Your Current Organism:
Bacillus subtilis spizizenii
NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10
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