(37 nodes) Binding-protein-dependent transport system inner membrane component network (Bacillus subtilis spizizenii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GYO_1612	Dipeptide transport system permease protein DppB. (308 aa)
	GYO_0971	Protein LplB. (318 aa)
	GYO_3697	Choline transport system permease protein opuBD. (223 aa)
	GYO_0959	Inner membrane protein. (296 aa)
	GYO_0958	Inner membrane protein. (301 aa)
	GYO_0575	Putative amino-acid ABC transporter permease protein YckJ. (234 aa)
	GYO_0545	YckA. (226 aa)
	GYO_0503	Glycine betaine transport system permease protein opuAB. (282 aa)
	GYO_3699	Choline transport system permease protein opuBB. (217 aa)
	GYO_3703	Glycine betaine/carnitine/choline transport system permease proteinopuCD. (222 aa)
	GYO_3705	Glycine betaine/carnitine/choline transport system permease proteinopuCB. (217 aa)
	GYO_3746	YvfM. (283 aa)
	GYO_3747	YvfL. (418 aa)
	GYO_3793	YvdI. (278 aa)
	GYO_3794	YvdH. (435 aa)
	GYO_4357	Amino acid ABC transporter, permease protein. (224 aa)
	GYO_0972	Protein LplC. (295 aa)
	GYO_1171	Putative aliphatic sulfonates transport permease protein SsuC. (276 aa)
	GYO_1443	Oligopeptide transport system permease protein AppB. (316 aa)
	GYO_1444	Oligopeptide transport system permease protein AppC. (304 aa)
	oppB	Oligopeptide transport system permease protein OppB. (311 aa)
	oppC	Oligopeptide transport system permease protein OppC. (305 aa)
	GYO_1613	Dipeptide transport system permease protein DppC. (320 aa)
	GYO_2642	YqiY. (219 aa)
	pstA	Phosphate ABC transporter, permease protein PstA. (294 aa)
	pstC	Phosphate ABC transporter, permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (309 aa)
	GYO_3123	L-arabinose transport system permease protein AraQ. (281 aa)
	GYO_3124	L-arabinose transport system permease protein AraP. (313 aa)
	GYO_3261	Protein LplB. (321 aa)
	GYO_3264	Protein LplC. (293 aa)
	GYO_3277	Sugar transport protein. (303 aa)
	GYO_3278	Maltose transport protein. (276 aa)
	ytlD	ABC transporter, permease sporulation protein YtlD. (270 aa)
	GYO_3558	ABC sugar transporter, inner membrane subunit. (300 aa)
	GYO_3559	ABC sugar transporter, inner membrane subunit. (292 aa)
	GYO_3575	YusB. (222 aa)
	modB	Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (227 aa)

Your Current Organism:

Bacillus subtilis spizizenii

NCBI taxonomy Id: 1052585
Other names: B. subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii TU-B-10, Bacillus subtilis subsp. spizizenii str. TU-B-10, Bacillus subtilis subsp. spizizenii strain TU-B-10

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GYO_0545	GYO_0575	GYO_0545	GYO_0575	YckA.	Putative amino-acid ABC transporter permease protein YckJ.	0.909
GYO_0545	GYO_2642	GYO_0545	GYO_2642	YckA.	YqiY.	0.490
GYO_0545	GYO_4357	GYO_0545	GYO_4357	YckA.	Amino acid ABC transporter, permease protein.	0.436
GYO_0575	GYO_0545	GYO_0575	GYO_0545	Putative amino-acid ABC transporter permease protein YckJ.	YckA.	0.909
GYO_0575	GYO_2642	GYO_0575	GYO_2642	Putative amino-acid ABC transporter permease protein YckJ.	YqiY.	0.482
GYO_0575	GYO_3794	GYO_0575	GYO_3794	Putative amino-acid ABC transporter permease protein YckJ.	YvdH.	0.406
GYO_0575	GYO_4357	GYO_0575	GYO_4357	Putative amino-acid ABC transporter permease protein YckJ.	Amino acid ABC transporter, permease protein.	0.457
GYO_0958	GYO_0959	GYO_0958	GYO_0959	Inner membrane protein.	Inner membrane protein.	0.996
GYO_0958	GYO_0971	GYO_0958	GYO_0971	Inner membrane protein.	Protein LplB.	0.459
GYO_0958	GYO_0972	GYO_0958	GYO_0972	Inner membrane protein.	Protein LplC.	0.898
GYO_0958	GYO_3123	GYO_0958	GYO_3123	Inner membrane protein.	L-arabinose transport system permease protein AraQ.	0.884
GYO_0958	GYO_3264	GYO_0958	GYO_3264	Inner membrane protein.	Protein LplC.	0.882
GYO_0958	GYO_3278	GYO_0958	GYO_3278	Inner membrane protein.	Maltose transport protein.	0.884
GYO_0958	GYO_3558	GYO_0958	GYO_3558	Inner membrane protein.	ABC sugar transporter, inner membrane subunit.	0.884
GYO_0958	GYO_3746	GYO_0958	GYO_3746	Inner membrane protein.	YvfM.	0.901
GYO_0958	GYO_3793	GYO_0958	GYO_3793	Inner membrane protein.	YvdI.	0.884
GYO_0959	GYO_0958	GYO_0959	GYO_0958	Inner membrane protein.	Inner membrane protein.	0.996
GYO_0959	GYO_0971	GYO_0959	GYO_0971	Inner membrane protein.	Protein LplB.	0.861
GYO_0959	GYO_0972	GYO_0959	GYO_0972	Inner membrane protein.	Protein LplC.	0.512
GYO_0959	GYO_3124	GYO_0959	GYO_3124	Inner membrane protein.	L-arabinose transport system permease protein AraP.	0.885

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