STRINGSTRING
gtf2h1 gtf2h1 DFA_03103 DFA_03103 DFA_03104 DFA_03104 DFA_03105 DFA_03105 DFA_03156 DFA_03156 cdk9-2 cdk9-2 bdp1 bdp1 gtf2f1 gtf2f1 H4a H4a DFA_03423 DFA_03423 tcea1 tcea1 DFA_03494 DFA_03494 DFA_03513 DFA_03513 rpb9 rpb9 DFA_03575 DFA_03575 nhp6 nhp6 DFA_02888 DFA_02888 DFA_06565 DFA_06565 DFA_06613 DFA_06613 DFA_05510 DFA_05510 DFA_05732 DFA_05732 gtf2h3 gtf2h3 DFA_05802 DFA_05802 gtf2f2 gtf2f2 DFA_05229 DFA_05229 leo1 leo1 DFA_05290 DFA_05290 maf1 maf1 rpc3 rpc3 rpc1 rpc1 DFA_04637 DFA_04637 gtf2h2 gtf2h2 taf6 taf6 DFA_01987 DFA_01987 rpc11 rpc11 DFA_01294 DFA_01294 rpb6 rpb6 taf5 taf5 spt16 spt16 rpb4 rpb4 gtf2h4 gtf2h4 DFA_00749 DFA_00749 cdk7 cdk7 DFA_00826 DFA_00826 DFA_00849 DFA_00849 gtf2a1 gtf2a1 rpc34 rpc34 DFA_00926 DFA_00926 rpa12 rpa12 spt4 spt4 cdc73 cdc73 DFA_07149 DFA_07149 repD repD DFA_07255 DFA_07255 brf1 brf1 rpb10 rpb10 DFA_07353 DFA_07353 DFA_07558 DFA_07558 rpc5 rpc5 cycK cycK abpF abpF ssrp1 ssrp1 rpa43 rpa43 DFA_00086 DFA_00086 sid1 sid1 DFA_00125 DFA_00125 rpa1 rpa1 H2AZ H2AZ rpb12 rpb12 DFA_02382 DFA_02382 mnat1 mnat1 paf1 paf1 gtf2a2 gtf2a2 rpb2 rpb2 DFA_04168 DFA_04168 DFA_06657 DFA_06657 spt5 spt5 H2Bv3 H2Bv3 elof1 elof1 DFA_08556 DFA_08556 rpb3 rpb3 ctr9 ctr9 ercc8 ercc8 DFA_07858 DFA_07858 DFA_08696 DFA_08696 DFA_08723 DFA_08723 ercc6 ercc6 DFA_08759 DFA_08759 rpb8 rpb8 DFA_07959 DFA_07959 DFA_07964 DFA_07964 DFA_08127 DFA_08127 rpa2 rpa2 rpb1 rpb1 DFA_09494 DFA_09494 DFA_09736 DFA_09736 rpa5 rpa5 taf13 taf13 DFA_09810 DFA_09810 gtf2e1-1 gtf2e1-1 gtf2e2 gtf2e2 repB repB H2AX H2AX H3a H3a DFA_11423 DFA_11423 DFA_12245 DFA_12245 DFA_11442 DFA_11442 rpc4 rpc4 taf11 taf11 gtf2b gtf2b H1 H1 rpc19 rpc19 rpa49 rpa49 taf9 taf9 med1 med1 DFA_11951 DFA_11951 spt6 spt6 taf7 taf7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gtf2h1General transcription factor IIH component. (611 aa)
DFA_03103RNA polymerase III. (290 aa)
DFA_03104RNA polymerase III. (183 aa)
DFA_03105RNA polymerase III. (203 aa)
DFA_03156Usp domain-containing protein. (179 aa)
cdk9-2Uncharacterized protein cdk9-2. (524 aa)
bdp1Myb domain-containing protein. (446 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (585 aa)
H4aHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (105 aa)
DFA_03423Uncharacterized protein. (179 aa)
tcea1RNA polymerase II elongation factor. (325 aa)
DFA_03494Putative tyrosinase. (580 aa)
DFA_03513Uncharacterized protein. (585 aa)
rpb9RNA polymerase II core subunit. (108 aa)
DFA_03575mRNA cap 0 methyltransferase domain-containing protein. (1343 aa)
nhp6High mobility group box-containing protein. (349 aa)
DFA_02888Uncharacterized protein. (1268 aa)
DFA_06565TFIID_20kDa domain-containing protein. (362 aa)
DFA_06613Uncharacterized protein. (761 aa)
DFA_05510Protein serine/threonine kinase. (336 aa)
DFA_05732Uncharacterized protein. (751 aa)
gtf2h3General transcription factor IIH. (304 aa)
DFA_05802Uncharacterized protein. (555 aa)
gtf2f2TFIIF subunit. (243 aa)
DFA_05229Plus3 domain-containing protein. (611 aa)
leo1RNA polymerase II complex component. (653 aa)
DFA_05290Peptidase_M1 domain-containing protein. (1643 aa)
maf1Repressor of RNA polymerase III transcription. (267 aa)
rpc3RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (633 aa)
rpc1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1507 aa)
DFA_04637Uncharacterized protein. (397 aa)
gtf2h2General transcription factor IIH subunit. (457 aa)
taf6TATA-binding protein-associated-factor. (462 aa)
DFA_01987WD_REPEATS_REGION domain-containing protein. (751 aa)
rpc11RNA polymerase III subunit. (99 aa)
DFA_01294BTP domain-containing protein. (368 aa)
rpb6RNA polymerase II core subunit. (125 aa)
taf5Transcription initiation factor TFIID subunit. (888 aa)
spt16FACT complex subunit SPT16. (1033 aa)
rpb4DNA-directed RNA polymerase II subunit 4. (138 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (453 aa)
DFA_00749Uncharacterized protein. (222 aa)
cdk7P34-cdc2 protein; Belongs to the protein kinase superfamily. (336 aa)
DFA_00826Uncharacterized protein. (880 aa)
DFA_00849RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (757 aa)
gtf2a1Transcription factor IIA. (298 aa)
rpc34DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (279 aa)
DFA_00926PHD Zn finger-containing protein. (1031 aa)
rpa12RNA polymerase I subunit. (264 aa)
spt4Transcription initiation factor Spt4. (131 aa)
cdc73RNA polymerase II complex component. (452 aa)
DFA_07149Histone H2A; Belongs to the histone H2A family. (225 aa)
repDTranscription factor IIH component. (791 aa)
DFA_07255TAF4 domain-containing protein. (1112 aa)
brf1TATA box-binding protein-associated factor. (750 aa)
rpb10RNA polymerase N/8 kDa subunit. (74 aa)
DFA_07353Uncharacterized protein. (217 aa)
DFA_07558Putative transcription elongation factor B polypeptide 1; Belongs to the SKP1 family. (108 aa)
rpc5RNA polymerase III subunit. (685 aa)
cycKCyclin; Belongs to the cyclin family. (600 aa)
abpFUncharacterized protein abpF. (2497 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (510 aa)
rpa43RNA polymerase I subunit. (377 aa)
DFA_00086Uncharacterized protein. (875 aa)
sid1Transmembrane protein. (417 aa)
DFA_00125Uncharacterized protein. (1527 aa)
rpa1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1662 aa)
H2AZHistone H2A; Belongs to the histone H2A family. (150 aa)
rpb12RNA polymerase. (67 aa)
DFA_02382Histone H3 domain-containing protein. (136 aa)
mnat1CDK-activating kinase assembly factor MAT1. (323 aa)
paf1RNA polymerase II-associated factor 1. (476 aa)
gtf2a2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (118 aa)
rpb2DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1565 aa)
DFA_04168Uncharacterized protein. (660 aa)
DFA_06657RNA polymerase II core subunit. (1128 aa)
spt5Transcription elongation factor SPT5. (1072 aa)
H2Bv3Histone H2B domain-containing protein; Belongs to the histone H2B family. (258 aa)
elof1Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
DFA_08556Uncharacterized protein. (174 aa)
rpb3RNA polymerase II core subunit. (296 aa)
ctr9RNA polymerase II complex component. (1047 aa)
ercc8WD40 repeat-containing protein. (570 aa)
DFA_07858Uncharacterized protein. (485 aa)
DFA_08696IWS1 family protein. (565 aa)
DFA_08723Uncharacterized protein. (971 aa)
ercc6SNF2-related domain-containing protein. (1268 aa)
DFA_08759Histone domain-containing protein; Belongs to the histone H2B family. (164 aa)
rpb8RNA polymerase II core subunit. (164 aa)
DFA_07959Uncharacterized protein. (266 aa)
DFA_07964EAF domain-containing protein. (457 aa)
DFA_08127WD40 repeat-containing protein. (2304 aa)
rpa2DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1010 aa)
rpb1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1701 aa)
DFA_09494ENTH/VHS domain-containing protein. (835 aa)
DFA_09736NLPC_P60 domain-containing protein. (333 aa)
rpa5RNA polymerase III subunit. (355 aa)
taf13Transcription initiation factor TFIID subunit. (193 aa)
DFA_09810Uncharacterized protein. (213 aa)
gtf2e1-1Transcription factor IIE. (479 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (272 aa)
repBTranscription factor IIH subunit. (810 aa)
H2AXHistone H2A; Belongs to the histone H2A family. (156 aa)
H3aHistone H3. (137 aa)
DFA_11423SET domain-containing protein. (1418 aa)
DFA_12245TPR repeat-containing protein. (1601 aa)
DFA_11442Protein kinase domain-containing protein. (377 aa)
rpc4RNA polymerase III subunit. (449 aa)
taf11Transcription initiation factor TFIID subunit. (410 aa)
gtf2bTranscription initiation factor IIB. (331 aa)
H1Histone H1. (467 aa)
rpc19Putative RNA polymerase III subunit. (103 aa)
rpa49Putative RNA polymerase I subunit. (372 aa)
taf9Transcription initiation factor TFIID subunit. (301 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (655 aa)
DFA_11951Uncharacterized protein. (130 aa)
spt6Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1633 aa)
taf7Transcription initiation factor TFIID subunit. (747 aa)
Your Current Organism:
Cavenderia fasciculata
NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3
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