(10 nodes) mRNA polyadenylation, and E3 ubiquitin-protein ligase RBBP6 family network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_03323	Uncharacterized protein. (589 aa)
	DFA_04708	Uncharacterized protein. (78 aa)
	DFA_01942	WD40 repeat-containing protein. (696 aa)
	DFA_00543	WD_REPEATS_REGION domain-containing protein. (251 aa)
	papA	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (803 aa)
	fip1l1	Cleavage and polyadenylation specificity factor FIP1. (405 aa)
	cpsf3	Beta-lactamase domain-containing protein. (786 aa)
	sympk	Symplekin. (1201 aa)
	cpsf2	Cleavage and polyadenylation specificity factor subunit 2. (768 aa)
	cpsf1	CPSF domain-containing protein. (1627 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_00543	DFA_01942	F4PSD6	F4PQU5	WD_REPEATS_REGION domain-containing protein.	WD40 repeat-containing protein.	0.998
DFA_00543	DFA_03323	F4PSD6	F4PH93	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.976
DFA_00543	DFA_04708	F4PSD6	F4PQB5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.994
DFA_00543	cpsf1	F4PSD6	F4QEG3	WD_REPEATS_REGION domain-containing protein.	CPSF domain-containing protein.	0.999
DFA_00543	cpsf2	F4PSD6	F4Q9E5	WD_REPEATS_REGION domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
DFA_00543	cpsf3	F4PSD6	F4Q8H1	WD_REPEATS_REGION domain-containing protein.	Beta-lactamase domain-containing protein.	0.999
DFA_00543	fip1l1	F4PSD6	F4Q737	WD_REPEATS_REGION domain-containing protein.	Cleavage and polyadenylation specificity factor FIP1.	0.999
DFA_00543	papA	F4PSD6	F4PYA7	WD_REPEATS_REGION domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.988
DFA_00543	sympk	F4PSD6	F4Q935	WD_REPEATS_REGION domain-containing protein.	Symplekin.	0.994
DFA_01942	DFA_00543	F4PQU5	F4PSD6	WD40 repeat-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
DFA_01942	DFA_03323	F4PQU5	F4PH93	WD40 repeat-containing protein.	Uncharacterized protein.	0.994
DFA_01942	DFA_04708	F4PQU5	F4PQB5	WD40 repeat-containing protein.	Uncharacterized protein.	0.985
DFA_01942	cpsf1	F4PQU5	F4QEG3	WD40 repeat-containing protein.	CPSF domain-containing protein.	0.999
DFA_01942	cpsf2	F4PQU5	F4Q9E5	WD40 repeat-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
DFA_01942	cpsf3	F4PQU5	F4Q8H1	WD40 repeat-containing protein.	Beta-lactamase domain-containing protein.	0.999
DFA_01942	fip1l1	F4PQU5	F4Q737	WD40 repeat-containing protein.	Cleavage and polyadenylation specificity factor FIP1.	0.999
DFA_01942	papA	F4PQU5	F4PYA7	WD40 repeat-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.994
DFA_01942	sympk	F4PQU5	F4Q935	WD40 repeat-containing protein.	Symplekin.	0.999
DFA_03323	DFA_00543	F4PH93	F4PSD6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.976
DFA_03323	DFA_01942	F4PH93	F4PQU5	Uncharacterized protein.	WD40 repeat-containing protein.	0.994