(14 nodes) Mixed, incl. Small GTPase Rho, and NACHT nucleoside triphosphatase network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_03542	Uncharacterized protein. (196 aa)
	DFA_05952	Uncharacterized protein. (1541 aa)
	DFA_05312	Uncharacterized protein. (372 aa)
	DFA_00336	RGS domain-containing protein. (168 aa)
	DFA_00687	Uncharacterized protein. (147 aa)
	DFA_06907	Uncharacterized protein. (447 aa)
	DFA_02052	Uncharacterized protein. (681 aa)
	DFA_04198	ANK_REP_REGION domain-containing protein. (647 aa)
	lrrA	Leucine-rich repeat-containing protein. (399 aa)
	DFA_08066	Uncharacterized protein. (1353 aa)
	DFA_08226	ANK_REP_REGION domain-containing protein. (684 aa)
	DFA_10310	Uncharacterized protein. (1166 aa)
	gacQ	RhoGAP domain-containing protein. (978 aa)
	DFA_11693	Uncharacterized protein. (716 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_00336	DFA_00687	F4PR64	F4PT86	RGS domain-containing protein.	Uncharacterized protein.	0.999
DFA_00336	DFA_02052	F4PR64	F4PYK0	RGS domain-containing protein.	Uncharacterized protein.	0.666
DFA_00336	DFA_03542	F4PR64	F4PHV9	RGS domain-containing protein.	Uncharacterized protein.	0.417
DFA_00336	DFA_04198	F4PR64	F4Q1K1	RGS domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.999
DFA_00336	DFA_05952	F4PR64	F4PJP2	RGS domain-containing protein.	Uncharacterized protein.	0.697
DFA_00336	DFA_06907	F4PR64	F4PX02	RGS domain-containing protein.	Uncharacterized protein.	0.968
DFA_00336	DFA_08066	F4PR64	F4Q4X8	RGS domain-containing protein.	Uncharacterized protein.	0.408
DFA_00336	DFA_08226	F4PR64	F4Q5H7	RGS domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.999
DFA_00336	DFA_10310	F4PR64	F4Q9V2	RGS domain-containing protein.	Uncharacterized protein.	0.425
DFA_00336	DFA_11693	F4PR64	F4QDY5	RGS domain-containing protein.	Uncharacterized protein.	0.666
DFA_00336	gacQ	F4PR64	F4Q9Y1	RGS domain-containing protein.	RhoGAP domain-containing protein.	0.417
DFA_00336	lrrA	F4PR64	F4Q4T4	RGS domain-containing protein.	Leucine-rich repeat-containing protein.	0.448
DFA_00687	DFA_00336	F4PT86	F4PR64	Uncharacterized protein.	RGS domain-containing protein.	0.999
DFA_00687	DFA_02052	F4PT86	F4PYK0	Uncharacterized protein.	Uncharacterized protein.	0.918
DFA_00687	DFA_03542	F4PT86	F4PHV9	Uncharacterized protein.	Uncharacterized protein.	0.855
DFA_00687	DFA_04198	F4PT86	F4Q1K1	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.896
DFA_00687	DFA_05312	F4PT86	F4PNX7	Uncharacterized protein.	Uncharacterized protein.	0.917
DFA_00687	DFA_05952	F4PT86	F4PJP2	Uncharacterized protein.	Uncharacterized protein.	0.719
DFA_00687	DFA_06907	F4PT86	F4PX02	Uncharacterized protein.	Uncharacterized protein.	0.928
DFA_00687	DFA_08066	F4PT86	F4Q4X8	Uncharacterized protein.	Uncharacterized protein.	0.999