STRINGSTRING
DFA_03161 DFA_03161 cdc40 cdc40 ddx17 ddx17 snrpC snrpC DFA_03358 DFA_03358 dhx8 dhx8 lsm4 lsm4 isy1 isy1 ddx42 ddx42 DFA_06543 DFA_06543 DFA_06595 DFA_06595 DFA_05981 DFA_05981 DFA_06329 DFA_06329 slu7 slu7 snwA snwA cwc15-2 cwc15-2 DFA_05149 DFA_05149 phf5a phf5a wdr53 wdr53 aqr aqr lsm2 lsm2 prpf3 prpf3 prp18 prp18 prp19 prp19 DFA_04693 DFA_04693 fam32 fam32 DFA_01101 DFA_01101 prpf4 prpf4 cypE cypE DFA_00375 DFA_00375 sf3b5 sf3b5 DFA_00554 DFA_00554 snrpG snrpG DFA_00678 DFA_00678 snrp70 snrp70 dhx16 dhx16 bud31 bud31 DFA_00767 DFA_00767 vps13D vps13D DFA_00806 DFA_00806 sf3b2 sf3b2 snrpD1 snrpD1 sf1 sf1 ctnnbl1 ctnnbl1 DFA_00950 DFA_00950 DFA_00951 DFA_00951 DFA_01010 DFA_01010 lsm3 lsm3 DFA_07143 DFA_07143 DFA_07299 DFA_07299 DFA_07430 DFA_07430 DFA_07502 DFA_07502 ubl5 ubl5 DFA_06883 DFA_06883 sf3a2 sf3a2 smu1 smu1 ascc3l ascc3l sf3b1 sf3b1 DFA_02550 DFA_02550 DFA_02642 DFA_02642 sf3a3 sf3a3 DFA_02673 DFA_02673 cdc5l cdc5l wdr57 wdr57 ppiH ppiH DFA_03688 DFA_03688 DFA_03689 DFA_03689 DFA_06645 DFA_06645 snrpA1 snrpA1 snrpB2 snrpB2 helB1 helB1 sf3b3 sf3b3 DFA_08659 DFA_08659 spf27 spf27 DFA_08732 DFA_08732 lsm7 lsm7 lsm6 lsm6 DFA_08773 DFA_08773 DFA_08792 DFA_08792 DFA_08825 DFA_08825 DFA_08826 DFA_08826 helB2 helB2 ddx41 ddx41 prpf8 prpf8 DFA_09386 DFA_09386 ppil2 ppil2 mfap1 mfap1 snrpD2 snrpD2 DFA_10421 DFA_10421 DFA_09807 DFA_09807 lsm1 lsm1 plrg1 plrg1 DFA_10742 DFA_10742 DFA_10856 DFA_10856 ppil3 ppil3 rnf113 rnf113 lsm5 lsm5 DFA_12168 DFA_12168 DFA_11415 DFA_11415 snrpD3 snrpD3 CRNKL1 CRNKL1 sf3a1 sf3a1 bud13 bud13 prpf6 prpf6 DFA_12361 DFA_12361 DFA_11620 DFA_11620 DFA_11635 DFA_11635 DFA_11686 DFA_11686 ppwd1 ppwd1 lsm8 lsm8 txnl4a txnl4a xab2 xab2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DFA_03161CwfJ family protein. (906 aa)
cdc40WD40 repeat-containing protein. (495 aa)
ddx17Putative RNA helicase. (806 aa)
snrpCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (149 aa)
DFA_03358Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (495 aa)
dhx8DEAD/DEAH box helicase. (1152 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (162 aa)
isy1ISY1-like protein. (232 aa)
ddx42Putative RNA helicase. (806 aa)
DFA_06543RNA-binding region RNP-1 domain-containing protein. (280 aa)
DFA_06595SART-1 family protein. (678 aa)
DFA_05981Uncharacterized protein. (167 aa)
DFA_06329Uncharacterized protein. (1027 aa)
slu7Putative RNA splicing factor. (558 aa)
snwANuclear receptor coactivator NC0A-62. (1243 aa)
cwc15-2Putative pre-mRNA-splicing factor CWC15. (293 aa)
DFA_05149RNA recognition motif-containing protein RRM. (119 aa)
phf5aPHD finger-like domain-containing protein 5A. (110 aa)
wdr53WD40 repeat-containing protein. (352 aa)
aqrIntron-binding protein. (1488 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
prpf3U4/U6 small nuclear ribonucleoprotein. (877 aa)
prp18Putative RNA splicing factor. (348 aa)
prp19WD40 repeat-containing protein. (509 aa)
DFA_04693Prespore-specific protein. (535 aa)
fam32DUF1754 family protein. (127 aa)
DFA_01101DUF2040 domain-containing protein. (339 aa)
prpf4WD40 repeat-containing protein. (502 aa)
cypEPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
DFA_00375U1-type domain-containing protein. (339 aa)
sf3b5Splicing factor subunit; Belongs to the SF3B5 family. (96 aa)
DFA_00554CPSF_A domain-containing protein. (1355 aa)
snrpGSmall nuclear ribonucleoprotein G. (125 aa)
DFA_00678Cyclophilin-type peptidylprolyl cis-trans isomerase. (213 aa)
snrp70U1 small nuclear ribonucleoprotein 70 kDa protein. (433 aa)
dhx16DEAD/DEAH box helicase. (1110 aa)
bud31Putative RNA splicing factor. (160 aa)
DFA_00767Uncharacterized protein. (1597 aa)
vps13DVacuolar protein sorting-associated protein 13 family protein. (4631 aa)
DFA_00806RNA recognition motif-containing protein. (454 aa)
sf3b2PSP proline-rich domain-containing protein. (485 aa)
snrpD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (185 aa)
sf1Uncharacterized protein sf1. (486 aa)
ctnnbl1Armadillo-like helical domain-containing protein. (582 aa)
DFA_00950Sm domain-containing protein. (97 aa)
DFA_00951Uncharacterized protein. (109 aa)
DFA_01010G-patch domain-containing protein. (1076 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
DFA_07143PPIase cyclophilin-type domain-containing protein. (432 aa)
DFA_07299Uncharacterized protein. (310 aa)
DFA_07430Nuclear NF-kappaB activating protein. (487 aa)
DFA_07502WD_REPEATS_REGION domain-containing protein. (721 aa)
ubl5Ubiquitin-like protein 5. (84 aa)
DFA_06883Uncharacterized protein. (547 aa)
sf3a2U1-type zinc finger-containing protein. (276 aa)
smu1WD40 repeat-containing protein. (600 aa)
ascc3lDEAD/DEAH box helicase. (2224 aa)
sf3b1HEAT repeat-containing protein. (1028 aa)
DFA_02550Uncharacterized protein. (1422 aa)
DFA_02642SWAP/Surp domain-containing protein. (284 aa)
sf3a3C2H2-type zinc finger-containing protein. (595 aa)
DFA_02673C2H2-type zinc finger-containing protein. (319 aa)
cdc5lMyb domain-containing protein. (823 aa)
wdr57WD40 repeat-containing protein. (361 aa)
ppiHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (183 aa)
DFA_03688RNA-binding region RNP-1 domain-containing protein. (435 aa)
DFA_03689RRM domain-containing protein. (128 aa)
DFA_06645RNA-binding region RNP-1 domain-containing protein. (670 aa)
snrpA1Leucine-rich repeat-containing protein. (212 aa)
snrpB2U2 small nuclear ribonucleoprotein B. (241 aa)
helB1Putative RNA helicase. (923 aa)
sf3b3CPSF domain-containing protein. (1194 aa)
DFA_08659Cir_N domain-containing protein. (539 aa)
spf27Spliceosome-associated protein. (242 aa)
DFA_08732RING-type domain-containing protein. (945 aa)
lsm7LSM domain-containing protein. (106 aa)
lsm6LSM domain-containing protein. (95 aa)
DFA_08773Nop domain-containing protein. (567 aa)
DFA_08792Sde2_N_Ubi domain-containing protein. (794 aa)
DFA_08825U5 small nuclear ribonucleoprotein subunit. (394 aa)
DFA_08826U5 small nuclear ribonucleoprotein subunit. (136 aa)
helB2Putative RNA helicase. (834 aa)
ddx41DEAD/DEAH box helicase. (631 aa)
prpf8Pre-mRNA processing factor 8. (2335 aa)
DFA_09386Initiation factor eIF-4 gamma middle domain-containing protein. (798 aa)
ppil2Cyclophilin-type peptidylprolyl cis-trans isomerase. (565 aa)
mfap1Microfibrillar-associated protein 1-like protein. (461 aa)
snrpD2Small nuclear ribonucleoprotein Sm D2. (110 aa)
DFA_10421Uncharacterized protein. (358 aa)
DFA_09807Leucine-rich repeat-containing protein. (506 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (84 aa)
plrg1WD40 repeat-containing protein. (338 aa)
DFA_10742WD_REPEATS_REGION domain-containing protein. (97 aa)
DFA_10856Uncharacterized protein. (218 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
rnf113RING zinc finger-containing protein. (326 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (98 aa)
DFA_12168Uncharacterized protein. (1038 aa)
DFA_11415XAP5 protein. (393 aa)
snrpD3Small nuclear ribonucleoprotein Sm D3. (170 aa)
CRNKL1HAT repeat-containing protein. (669 aa)
sf3a1Ubiquitin domain-containing protein. (673 aa)
bud13Uncharacterized protein bud13. (502 aa)
prpf6TPR repeat-containing protein. (756 aa)
DFA_12361Uncharacterized protein. (314 aa)
DFA_11620G-patch domain-containing protein. (531 aa)
DFA_11635CCCH-type zinc finger-containing protein. (389 aa)
DFA_11686Uncharacterized protein. (899 aa)
ppwd1WD40 repeat-containing protein. (782 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (145 aa)
txnl4aThioredoxin-like U5 small nuclear ribonucleoprotein. (142 aa)
xab2TPR-like helical domain-containing protein. (1076 aa)
Your Current Organism:
Cavenderia fasciculata
NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3
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