(18 nodes) Mixed, incl. RNA Polymerase II Transcription Termination, and Exon-exon junction complex network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_03024	Uncharacterized protein. (1023 aa)
	DFA_03263	Uncharacterized protein. (671 aa)
	sky1	Uncharacterized protein sky1. (316 aa)
	DFA_06065	Uncharacterized protein. (1151 aa)
	DFA_05314	RRM domain-containing protein. (527 aa)
	u2af1	RNA-binding region RNP-1 domain-containing protein. (447 aa)
	magoh	Mago nashi protein. (176 aa)
	uap56	DEAD/DEAH box helicase. (426 aa)
	DFA_04683	RNA-binding region RNP-1 domain-containing protein. (348 aa)
	pabpn1	Polyadenylate-binding protein 2. (243 aa)
	tifA	DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. (418 aa)
	rbm8A	RNA recognition motif-containing protein RRM. (211 aa)
	DFA_01769	Smg4_UPF3 domain-containing protein. (206 aa)
	DFA_07562	SAP DNA-binding domain-containing protein. (633 aa)
	srrm1	Putative RNA splicing factor. (534 aa)
	DFA_07615	Pinin_SDK_memA domain-containing protein. (422 aa)
	DFA_09172	SCA7 domain-containing protein. (1069 aa)
	DFA_11640	RapGAP/RanGAP domain-containing protein. (3032 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_01769	DFA_03024	F4PUL9	F4PGE6	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.501
DFA_01769	DFA_03263	F4PUL9	F4PH33	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.719
DFA_01769	DFA_04683	F4PUL9	F4PQ90	Smg4_UPF3 domain-containing protein.	RNA-binding region RNP-1 domain-containing protein.	0.968
DFA_01769	DFA_05314	F4PUL9	F4PKW0	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.402
DFA_01769	DFA_06065	F4PUL9	F4PK03	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.402
DFA_01769	DFA_07562	F4PUL9	F4PWS4	Smg4_UPF3 domain-containing protein.	SAP DNA-binding domain-containing protein.	0.673
DFA_01769	DFA_07615	F4PUL9	F4Q651	Smg4_UPF3 domain-containing protein.	Pinin_SDK_memA domain-containing protein.	0.815
DFA_01769	DFA_09172	F4PUL9	F4Q6W5	Smg4_UPF3 domain-containing protein.	SCA7 domain-containing protein.	0.734
DFA_01769	DFA_11640	F4PUL9	F4QDT2	Smg4_UPF3 domain-containing protein.	RapGAP/RanGAP domain-containing protein.	0.653
DFA_01769	magoh	F4PUL9	F4PN54	Smg4_UPF3 domain-containing protein.	Mago nashi protein.	0.965
DFA_01769	pabpn1	F4PUL9	F4PQQ4	Smg4_UPF3 domain-containing protein.	Polyadenylate-binding protein 2.	0.959
DFA_01769	rbm8A	F4PUL9	F4PTU0	Smg4_UPF3 domain-containing protein.	RNA recognition motif-containing protein RRM.	0.982
DFA_01769	srrm1	F4PUL9	F4Q172	Smg4_UPF3 domain-containing protein.	Putative RNA splicing factor.	0.979
DFA_01769	tifA	F4PUL9	F4PT25	Smg4_UPF3 domain-containing protein.	DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family.	0.986
DFA_01769	u2af1	F4PUL9	F4PLS8	Smg4_UPF3 domain-containing protein.	RNA-binding region RNP-1 domain-containing protein.	0.581
DFA_01769	uap56	F4PUL9	F4PP34	Smg4_UPF3 domain-containing protein.	DEAD/DEAH box helicase.	0.883
DFA_03024	DFA_01769	F4PGE6	F4PUL9	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.501
DFA_03024	DFA_04683	F4PGE6	F4PQ90	Uncharacterized protein.	RNA-binding region RNP-1 domain-containing protein.	0.668
DFA_03024	DFA_05314	F4PGE6	F4PKW0	Uncharacterized protein.	RRM domain-containing protein.	0.748
DFA_03024	DFA_06065	F4PGE6	F4PK03	Uncharacterized protein.	Uncharacterized protein.	0.748