41 items (Cavenderia fasciculata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	febA	4E-binding protein. (120 aa)
	pabpc1B	RNA-binding region RNP-1 domain-containing protein. (748 aa)
	DFA_06506	RNA recognition motif-containing protein RRM. (770 aa)
	DFA_06236	Putative CCR4-NOT complex subunit 1. (2350 aa)
	DFA_06326	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (264 aa)
	DFA_05474	Type A von Willebrand factor domain-containing protein. (1697 aa)
	DFA_05604	RNA recognition motif-containing protein RRM. (439 aa)
	btg	Anti-proliferative BTG domain-containing protein. (370 aa)
	DFA_04271	Uncharacterized protein. (826 aa)
	DFA_01113	NOT2/NOT3/NOT5 family protein. (774 aa)
	DFA_00377	Uncharacterized protein. (879 aa)
	DFA_01241	Uncharacterized protein. (529 aa)
	ifdA	DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. (397 aa)
	pan2	WD40-like domain-containing protein. (1093 aa)
	atxn2	Ataxin-2. (891 aa)
	eIF4g	Eukaryotic translation initiation factor 4 gamma. (1074 aa)
	DFA_01870	HTH La-type RNA-binding domain-containing protein. (748 aa)
	DFA_07057	Uncharacterized protein. (926 aa)
	DFA_07298	Uncharacterized protein. (425 aa)
	icpA	Inner centromere protein. (1111 aa)
	pabpc1A	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (567 aa)
	DFA_07528	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (140 aa)
	DFA_00080	Uncharacterized protein. (1044 aa)
	DFA_00107	Uncharacterized protein. (565 aa)
	DFA_02210	NOT2/NOT3/NOT5 family protein. (530 aa)
	DFA_02638	SAP DNA-binding domain-containing protein. (927 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' e [...] (667 aa)
	eIF4e	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (250 aa)
	DFA_07810	RING zinc finger-containing protein. (1244 aa)
	DFA_08720	Uncharacterized protein. (688 aa)
	DFA_07897	Cell differentiation family protein. (329 aa)
	DFA_08199	RNA-binding region RNP-1 domain-containing protein. (697 aa)
	DFA_09245	CAF1 family protein. (405 aa)
	DFA_09677	2-Aminomuconate deaminase. (446 aa)
	DFA_09793	Endonuclease/exonuclease/phosphatase domain-containing protein. (558 aa)
	rexo1	RNA exonuclease 1. (727 aa)
	DFA_10115	RRM domain-containing protein. (407 aa)
	DFA_10564	AD domain-containing protein. (191 aa)
	DFA_10831	Cell differentiation family. (400 aa)
	DFA_11366	Uncharacterized protein. (620 aa)
	DFA_11237	Putative CCR4-NOT complex subunit 10. (929 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_00080	ifdA	F4PXJ2	F4PT40	Uncharacterized protein.	DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family.	0.419
DFA_00107	ifdA	F4PXL9	F4PT40	Uncharacterized protein.	DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family.	0.419
DFA_00377	DFA_01870	F4PRG4	F4PV76	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.437
DFA_00377	DFA_05474	F4PRG4	F4PLC0	Uncharacterized protein.	Type A von Willebrand factor domain-containing protein.	0.680
DFA_00377	DFA_06236	F4PRG4	F4PKH3	Uncharacterized protein.	Putative CCR4-NOT complex subunit 1.	0.423
DFA_00377	DFA_06326	F4PRG4	F4PKQ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.658
DFA_00377	DFA_07528	F4PRG4	F4PWP0	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.658
DFA_00377	DFA_09245	F4PRG4	F4Q733	Uncharacterized protein.	CAF1 family protein.	0.515
DFA_00377	DFA_09793	F4PRG4	F4Q8M1	Uncharacterized protein.	Endonuclease/exonuclease/phosphatase domain-containing protein.	0.461
DFA_00377	PAN3	F4PRG4	F4Q1M4	Uncharacterized protein.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' e [...]	0.729
DFA_00377	atxn2	F4PRG4	F4PU17	Uncharacterized protein.	Ataxin-2.	0.720
DFA_00377	eIF4e	F4PRG4	F4Q354	Uncharacterized protein.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.658
DFA_00377	eIF4g	F4PRG4	F4PUJ0	Uncharacterized protein.	Eukaryotic translation initiation factor 4 gamma.	0.680
DFA_00377	icpA	F4PRG4	F4PW95	Uncharacterized protein.	Inner centromere protein.	0.680
DFA_00377	ifdA	F4PRG4	F4PT40	Uncharacterized protein.	DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family.	0.778
DFA_00377	pan2	F4PRG4	F4PTB9	Uncharacterized protein.	WD40-like domain-containing protein.	0.709
DFA_00377	rexo1	F4PRG4	F4Q8S3	Uncharacterized protein.	RNA exonuclease 1.	0.482
DFA_01113	DFA_01241	F4PQX3	F4PRM0	NOT2/NOT3/NOT5 family protein.	Uncharacterized protein.	0.975
DFA_01113	DFA_02210	F4PQX3	F4PYF6	NOT2/NOT3/NOT5 family protein.	NOT2/NOT3/NOT5 family protein.	0.999
DFA_01113	DFA_06236	F4PQX3	F4PKH3	NOT2/NOT3/NOT5 family protein.	Putative CCR4-NOT complex subunit 1.	0.999