(18 nodes) SUMOylation of chromatin organization proteins network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_03432	Prespore-specific protein. (893 aa)
	DFA_03433	Prespore-specific protein. (500 aa)
	ranbp1	Ran binding protein 1 domain-containing protein. (235 aa)
	DFA_04304	Putative nucleoporin. (1727 aa)
	DFA_04672	Uncharacterized protein. (770 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (931 aa)
	nup54	Nucleoporin 54. (465 aa)
	DFA_01365	Nsp1_C domain-containing protein. (643 aa)
	DFA_00691	WD40 repeat-containing protein. (476 aa)
	nup93	Nuclear pore protein. (839 aa)
	DFA_07355	Uncharacterized protein. (3192 aa)
	nup155	Nucleoporin. (1482 aa)
	DFA_02521	Nuclear pore protein. (609 aa)
	DFA_03795	Sec13-like protein; Belongs to the WD repeat SEC13 family. (298 aa)
	DFA_09972	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (169 aa)
	nup43	WD40 repeat-containing protein. (404 aa)
	DFA_11965	Uncharacterized protein. (710 aa)
	DFA_11186	Uncharacterized protein. (2044 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_00691	DFA_01365	F4PT90	F4PSE9	WD40 repeat-containing protein.	Nsp1_C domain-containing protein.	0.995
DFA_00691	DFA_02521	F4PT90	F4PZL8	WD40 repeat-containing protein.	Nuclear pore protein.	0.995
DFA_00691	DFA_03432	F4PT90	F4PHK0	WD40 repeat-containing protein.	Prespore-specific protein.	0.922
DFA_00691	DFA_03433	F4PT90	F4PHK1	WD40 repeat-containing protein.	Prespore-specific protein.	0.922
DFA_00691	DFA_03795	F4PT90	F4Q0F0	WD40 repeat-containing protein.	Sec13-like protein; Belongs to the WD repeat SEC13 family.	0.919
DFA_00691	DFA_04304	F4PT90	F4PP73	WD40 repeat-containing protein.	Putative nucleoporin.	0.904
DFA_00691	DFA_04672	F4PT90	F4PQ79	WD40 repeat-containing protein.	Uncharacterized protein.	0.960
DFA_00691	DFA_07355	F4PT90	F4PW70	WD40 repeat-containing protein.	Uncharacterized protein.	0.995
DFA_00691	DFA_09972	F4PT90	F4Q8X9	WD40 repeat-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.964
DFA_00691	DFA_11186	F4PT90	F4QFB8	WD40 repeat-containing protein.	Uncharacterized protein.	0.955
DFA_00691	DFA_11965	F4PT90	F4QF42	WD40 repeat-containing protein.	Uncharacterized protein.	0.995
DFA_00691	nup107	F4PT90	F4PQT9	WD40 repeat-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.962
DFA_00691	nup155	F4PT90	F4PYU1	WD40 repeat-containing protein.	Nucleoporin.	0.982
DFA_00691	nup43	F4PT90	F4QB49	WD40 repeat-containing protein.	WD40 repeat-containing protein.	0.946
DFA_00691	nup54	F4PT90	F4PSE1	WD40 repeat-containing protein.	Nucleoporin 54.	0.953
DFA_00691	nup93	F4PT90	F4PTW7	WD40 repeat-containing protein.	Nuclear pore protein.	0.971
DFA_00691	ranbp1	F4PT90	F4PMA4	WD40 repeat-containing protein.	Ran binding protein 1 domain-containing protein.	0.820
DFA_01365	DFA_00691	F4PSE9	F4PT90	Nsp1_C domain-containing protein.	WD40 repeat-containing protein.	0.995
DFA_01365	DFA_02521	F4PSE9	F4PZL8	Nsp1_C domain-containing protein.	Nuclear pore protein.	0.998
DFA_01365	DFA_03432	F4PSE9	F4PHK0	Nsp1_C domain-containing protein.	Prespore-specific protein.	0.999