(10 nodes) Mismatched DNA binding network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mlh1	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family. (1199 aa)
	exo1	5'3'-exonuclease N-and I-domain-containing protein. (994 aa)
	msh4	MutS like protein. (930 aa)
	msh3	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1237 aa)
	mlh3	MutL DNA mismatch repair protein. (1219 aa)
	msh2	MutS like protein. (923 aa)
	msh6	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1168 aa)
	msh1	MutS like protein; Component of the post-replicative DNA mismatch repair system (MMR). (1062 aa)
	pms1	MutL DNA mismatch repair protein. (996 aa)
	msh5	MutS like protein. (987 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
exo1	mlh1	F4PIH2	F4PI82	5'3'-exonuclease N-and I-domain-containing protein.	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	0.990
exo1	mlh3	F4PIH2	F4PZ17	5'3'-exonuclease N-and I-domain-containing protein.	MutL DNA mismatch repair protein.	0.819
exo1	msh1	F4PIH2	F4Q980	5'3'-exonuclease N-and I-domain-containing protein.	MutS like protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.950
exo1	msh2	F4PIH2	F4Q060	5'3'-exonuclease N-and I-domain-containing protein.	MutS like protein.	0.950
exo1	msh3	F4PIH2	F4PSX6	5'3'-exonuclease N-and I-domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.809
exo1	msh4	F4PIH2	F4PJF4	5'3'-exonuclease N-and I-domain-containing protein.	MutS like protein.	0.805
exo1	msh5	F4PIH2	F4QB11	5'3'-exonuclease N-and I-domain-containing protein.	MutS like protein.	0.780
exo1	msh6	F4PIH2	F4Q8W3	5'3'-exonuclease N-and I-domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.980
exo1	pms1	F4PIH2	F4QAX1	5'3'-exonuclease N-and I-domain-containing protein.	MutL DNA mismatch repair protein.	0.980
mlh1	exo1	F4PI82	F4PIH2	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	5'3'-exonuclease N-and I-domain-containing protein.	0.990
mlh1	mlh3	F4PI82	F4PZ17	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	MutL DNA mismatch repair protein.	0.986
mlh1	msh1	F4PI82	F4Q980	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	MutS like protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.986
mlh1	msh2	F4PI82	F4Q060	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	MutS like protein.	0.990
mlh1	msh3	F4PI82	F4PSX6	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.968
mlh1	msh4	F4PI82	F4PJF4	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	MutS like protein.	0.945
mlh1	msh5	F4PI82	F4QB11	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	MutS like protein.	0.947
mlh1	msh6	F4PI82	F4Q8W3	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.996
mlh1	pms1	F4PI82	F4QAX1	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	MutL DNA mismatch repair protein.	0.999
mlh3	exo1	F4PZ17	F4PIH2	MutL DNA mismatch repair protein.	5'3'-exonuclease N-and I-domain-containing protein.	0.819
mlh3	mlh1	F4PZ17	F4PI82	MutL DNA mismatch repair protein.	MutL DNA mismatch repair protein; Belongs to the synaptobrevin family.	0.986