STRINGSTRING
DFA_06092 DFA_06092 DFA_06236 DFA_06236 DFA_01113 DFA_01113 rpb4 rpb4 pan2 pan2 DFA_00014 DFA_00014 DFA_02210 DFA_02210 PAN3 PAN3 DFA_08149 DFA_08149 DFA_09245 DFA_09245 DFA_09793 DFA_09793 dcp2 dcp2 lsm1 lsm1 DFA_10863 DFA_10863 DFA_10935 DFA_10935 DFA_11337 DFA_11337
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DFA_06092Exosome complex exonuclease RRP4. (379 aa)
DFA_06236Putative CCR4-NOT complex subunit 1. (2350 aa)
DFA_01113NOT2/NOT3/NOT5 family protein. (774 aa)
rpb4DNA-directed RNA polymerase II subunit 4. (138 aa)
pan2WD40-like domain-containing protein. (1093 aa)
DFA_00014Uncharacterized protein. (294 aa)
DFA_02210NOT2/NOT3/NOT5 family protein. (530 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' e [...] (667 aa)
DFA_08149Nudix hydrolase domain-containing protein. (657 aa)
DFA_09245CAF1 family protein. (405 aa)
DFA_09793Endonuclease/exonuclease/phosphatase domain-containing protein. (558 aa)
dcp2mRNA-decapping enzyme 2. (740 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (84 aa)
DFA_10863Putative exosome complex exonuclease RRP45. (469 aa)
DFA_10935Uncharacterized protein. (282 aa)
DFA_11337Putative nuclease. (286 aa)
Your Current Organism:
Cavenderia fasciculata
NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3
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