79 items (Cavenderia fasciculata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mcm4	DNA helicase; Belongs to the MCM family. (788 aa)
	adprt2	Poly [ADP-ribose] polymerase. (721 aa)
	DFA_08207	Phosphatase tensin type domain-containing protein. (1026 aa)
	DFA_07940	SAE2 domain-containing protein. (442 aa)
	DFA_08774	SWIM-type domain-containing protein. (172 aa)
	smc5	Structural maintenance of chromosome protein. (1093 aa)
	DFA_07670	Uncharacterized protein. (259 aa)
	polA	Mitochondrial DNA polymerase A. (1855 aa)
	adprt3	Poly [ADP-ribose] polymerase. (2478 aa)
	adprt1A	Poly [ADP-ribose] polymerase. (949 aa)
	DFA_02425	DNA repair and recombination protein rad22. (213 aa)
	DFA_02190	Sister chromatid cohesion protein. (1744 aa)
	rad50	DNA recombination/repair protein. (1306 aa)
	DFA_00009	Uncharacterized protein. (1170 aa)
	BRIP1	DEAD/DEAH box helicase. (1125 aa)
	DFA_06934	Uncharacterized protein. (580 aa)
	DFA_07304	Uncharacterized protein. (231 aa)
	DFA_07303	Putative DNA repair protein. (328 aa)
	adprt4	Poly [ADP-ribose] polymerase. (1670 aa)
	xrcc2	AAA ATPase domain-containing protein. (428 aa)
	ercc4	DNA excision repair protein 4. (950 aa)
	DFA_01715	Histidine triad family protein. (450 aa)
	wrn	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (926 aa)
	DFA_00625	Uncharacterized protein. (766 aa)
	mcm5	DNA helicase; Belongs to the MCM family. (722 aa)
	DFA_01289	Uncharacterized protein. (443 aa)
	DFA_01253	DNA polymerase theta short isoform. (989 aa)
	arpG	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (691 aa)
	DFA_00399	SWIM-type domain-containing protein. (989 aa)
	DFA_00396	Uncharacterized protein. (607 aa)
	DFA_01139	DSS1/SEM1 family protein. (106 aa)
	lig3	DNA ligase. (1087 aa)
	ku70	ATP-dependent DNA helicase. (825 aa)
	DFA_04537	ATP-dependent RNA helicase. (1558 aa)
	DFA_04403	Uncharacterized protein. (1857 aa)
	gxcFF	Pleckstrin domain-containing protein. (1211 aa)
	mcm3	DNA helicase; Belongs to the MCM family. (1320 aa)
	xrcc4	Putative DNA repair protein XRCC4. (392 aa)
	ddx1	Putative RNA helicase. (771 aa)
	DFA_05786	Poly [ADP-ribose] polymerase. (647 aa)
	mcm9	MCM family protein; Belongs to the MCM family. (954 aa)
	DFA_05546	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (359 aa)
	mcm2	DNA helicase; Belongs to the MCM family. (981 aa)
	rad54	SNF2-related domain-containing protein. (937 aa)
	xrcc3	AAA ATPase domain-containing protein. (410 aa)
	DFA_05401	Putative DNA repair protein. (476 aa)
	PNKP	SAP DNA-binding domain-containing protein. (598 aa)
	DFA_06335	SAP DNA-binding domain-containing protein. (783 aa)
	xrcc1	BRCT domain-containing protein. (759 aa)
	mcm6	DNA helicase; Belongs to the MCM family. (912 aa)
	ppp4C	Serine/threonine-protein phosphatase. (347 aa)
	ku80	ATP-dependent DNA helicase. (756 aa)
	exo1	5'3'-exonuclease N-and I-domain-containing protein. (994 aa)
	DFA_02806	Uncharacterized protein. (499 aa)
	DFA_03478	Uncharacterized protein. (370 aa)
	DFA_03417	Uncharacterized protein. (770 aa)
	DFA_03409	SMC hinge domain-containing protein. (2186 aa)
	DFA_03354	Uncharacterized protein. (367 aa)
	dclre1	DNA repair metallo-beta-lactamase domain-containing protein. (922 aa)
	lig4	DNA ligase IV. (1012 aa)
	mus81	Crossover junction endonuclease. (912 aa)
	DFA_09471	OB fold-containing protein. (216 aa)
	DFA_09427	Protein-tyrosine phosphatase 3. (596 aa)
	adprt1B	Poly [ADP-ribose] polymerase. (771 aa)
	cdc45	Cell division cycle protein 45. (654 aa)
	mcm7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (814 aa)
	smc6	Structural maintenance of chromosome protein. (1153 aa)
	DFA_11877	Uncharacterized protein. (400 aa)
	DFA_11036	SP-RING-type domain-containing protein. (272 aa)
	DFA_11837	Type A von Willebrand factor domain-containing protein. (908 aa)
	DFA_12339	WD40 repeat-containing protein. (1027 aa)
	DFA_11501	Uncharacterized protein. (1329 aa)
	DFA_12254	Uncharacterized protein. (890 aa)
	DFA_11413	DNA-dependent protein kinase subunit. (877 aa)
	dnapkcs	DNA-dependent protein kinase subunit; Belongs to the PI3/PI4-kinase family. (3111 aa)
	cdc7	Uncharacterized protein cdc7. (870 aa)
	polZ	DNA polymerase zeta catalytic subunit. (2115 aa)
	mre11	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (715 aa)
	DFA_10723	Uncharacterized protein. (2165 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRIP1	DFA_00009	F4PX32	F4PXC2	DEAD/DEAH box helicase.	Uncharacterized protein.	0.792
BRIP1	DFA_00399	F4PX32	F4PRN9	DEAD/DEAH box helicase.	SWIM-type domain-containing protein.	0.623
BRIP1	DFA_00625	F4PX32	F4PSX3	DEAD/DEAH box helicase.	Uncharacterized protein.	0.708
BRIP1	DFA_01289	F4PX32	F4PRW9	DEAD/DEAH box helicase.	Uncharacterized protein.	0.650
BRIP1	DFA_02425	F4PX32	F4PZE8	DEAD/DEAH box helicase.	DNA repair and recombination protein rad22.	0.650
BRIP1	DFA_03417	F4PX32	F4PHI5	DEAD/DEAH box helicase.	Uncharacterized protein.	0.453
BRIP1	DFA_04403	F4PX32	F4PPH2	DEAD/DEAH box helicase.	Uncharacterized protein.	0.694
BRIP1	DFA_04537	F4PX32	F4PPV3	DEAD/DEAH box helicase.	ATP-dependent RNA helicase.	0.803
BRIP1	DFA_05401	F4PX32	F4PL47	DEAD/DEAH box helicase.	Putative DNA repair protein.	0.497
BRIP1	DFA_05546	F4PX32	F4PLJ2	DEAD/DEAH box helicase.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.497
BRIP1	DFA_07303	F4PX32	F4PW19	DEAD/DEAH box helicase.	Putative DNA repair protein.	0.761
BRIP1	DFA_11501	F4PX32	F4QDB2	DEAD/DEAH box helicase.	Uncharacterized protein.	0.697
BRIP1	DFA_11877	F4PX32	F4QEK2	DEAD/DEAH box helicase.	Uncharacterized protein.	0.650
BRIP1	DFA_12254	F4PX32	F4QCV6	DEAD/DEAH box helicase.	Uncharacterized protein.	0.708
BRIP1	ercc4	F4PX32	F4PUY3	DEAD/DEAH box helicase.	DNA excision repair protein 4.	0.595
BRIP1	exo1	F4PX32	F4PIH2	DEAD/DEAH box helicase.	5'3'-exonuclease N-and I-domain-containing protein.	0.906
BRIP1	ku80	F4PX32	F4PIU8	DEAD/DEAH box helicase.	ATP-dependent DNA helicase.	0.476
BRIP1	lig3	F4PX32	F4PQP4	DEAD/DEAH box helicase.	DNA ligase.	0.461
BRIP1	lig4	F4PX32	F4PGQ7	DEAD/DEAH box helicase.	DNA ligase IV.	0.668
BRIP1	mcm6	F4PX32	F4PJH1	DEAD/DEAH box helicase.	DNA helicase; Belongs to the MCM family.	0.446