STRINGSTRING
ddx17 ddx17 DFA_01973 DFA_01973 upf2 upf2 dcp2 dcp2 DFA_10591 DFA_10591 DFA_10087 DFA_10087 DFA_09793 DFA_09793 DFA_09245 DFA_09245 ncbp1 ncbp1 DFA_09152 DFA_09152 exosc10 exosc10 DFA_08213 DFA_08213 DFA_08149 DFA_08149 DFA_07897 DFA_07897 lsm7 lsm7 DFA_03692 DFA_03692 PAN3 PAN3 DFA_04210 DFA_04210 pelo pelo DFA_02210 DFA_02210 DFA_00014 DFA_00014 DFA_07375 DFA_07375 mrt4 mrt4 DFA_01812 DFA_01812 DFA_01811 DFA_01811 DFA_01810 DFA_01810 DFA_01769 DFA_01769 pan2 pan2 rpb4 rpb4 DFA_01241 DFA_01241 DFA_01113 DFA_01113 DFA_03585 DFA_03585 lsm4 lsm4 DFA_05992 DFA_05992 DFA_06092 DFA_06092 DFA_06236 DFA_06236 DFA_06297 DFA_06297 DFA_04838 DFA_04838 DFA_05820 DFA_05820 DFA_05199 DFA_05199 DFA_04343 DFA_04343 smg1 smg1 DFA_11237 DFA_11237 ddx5 ddx5 xrn2 xrn2 xrn1 xrn1 DFA_11743 DFA_11743 DFA_11682 DFA_11682 snd1 snd1 upf1 upf1 DFA_11337 DFA_11337 DFA_10935 DFA_10935 DFA_10863 DFA_10863 DFA_10831 DFA_10831 lsm1 lsm1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ddx17Putative RNA helicase. (806 aa)
DFA_01973Multicopy Suppressor of STA10-11; Mss11p. (888 aa)
upf2Eukaryotic initiation factor 4 gamma. (1387 aa)
dcp2mRNA-decapping enzyme 2. (740 aa)
DFA_10591Ge1_WD40 domain-containing protein. (1190 aa)
DFA_10087AAA domain-containing protein. (854 aa)
DFA_09793Endonuclease/exonuclease/phosphatase domain-containing protein. (558 aa)
DFA_09245CAF1 family protein. (405 aa)
ncbp1Initiation factor eIF-4 gamma middle domain-containing protein. (522 aa)
DFA_09152Uncharacterized protein. (711 aa)
exosc103'-5' exonuclease. (818 aa)
DFA_08213RAI1 domain-containing protein. (387 aa)
DFA_08149Nudix hydrolase domain-containing protein. (657 aa)
DFA_07897Cell differentiation family protein. (329 aa)
lsm7LSM domain-containing protein. (106 aa)
DFA_03692Uncharacterized protein. (1061 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' e [...] (667 aa)
DFA_04210XRN_N domain-containing protein. (743 aa)
peloProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (405 aa)
DFA_02210NOT2/NOT3/NOT5 family protein. (530 aa)
DFA_00014Uncharacterized protein. (294 aa)
DFA_07375Bromodomain-containing protein. (910 aa)
mrt4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (228 aa)
DFA_01812Prematurely terminated mRNA decay factor-like protein. (492 aa)
DFA_01811zf-GRF domain-containing protein. (702 aa)
DFA_01810DUF2439 domain-containing protein. (396 aa)
DFA_01769Smg4_UPF3 domain-containing protein. (206 aa)
pan2WD40-like domain-containing protein. (1093 aa)
rpb4DNA-directed RNA polymerase II subunit 4. (138 aa)
DFA_01241Uncharacterized protein. (529 aa)
DFA_01113NOT2/NOT3/NOT5 family protein. (774 aa)
DFA_03585C3H1-type domain-containing protein. (1749 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (162 aa)
DFA_05992Hypothetical ribonuclease II domain containing protein; Belongs to the RNR ribonuclease family. (1193 aa)
DFA_06092Exosome complex exonuclease RRP4. (379 aa)
DFA_06236Putative CCR4-NOT complex subunit 1. (2350 aa)
DFA_06297RNase_PH domain-containing protein. (329 aa)
DFA_04838Tetratricopeptide-like helical domain-containing protein. (1670 aa)
DFA_05820RNase_PH domain-containing protein. (307 aa)
DFA_05199Thioredoxin domain-containing protein. (730 aa)
DFA_04343TPR_REGION domain-containing protein. (799 aa)
smg1Protein kinase; Belongs to the PI3/PI4-kinase family. (1938 aa)
DFA_11237Putative CCR4-NOT complex subunit 10. (929 aa)
ddx5Putative RNA helicase. (803 aa)
xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1157 aa)
xrn15'-3' exoribonuclease. (1808 aa)
DFA_11743Exosome complex exonuclease rrp41. (244 aa)
DFA_11682DEAD/DEAH box helicase. (1279 aa)
snd1Nuclease domain-containing protein. (929 aa)
upf1Helicase. (1162 aa)
DFA_11337Putative nuclease. (286 aa)
DFA_10935Uncharacterized protein. (282 aa)
DFA_10863Putative exosome complex exonuclease RRP45. (469 aa)
DFA_10831Cell differentiation family. (400 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (84 aa)
Your Current Organism:
Cavenderia fasciculata
NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3
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