(6 nodes) Cdc73/Paf1 complex network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	paf1	RNA polymerase II-associated factor 1. (476 aa)
	wdr61	WD40 repeat-containing protein. (336 aa)
	DFA_05229	Plus3 domain-containing protein. (611 aa)
	leo1	RNA polymerase II complex component. (653 aa)
	cdc73	RNA polymerase II complex component. (452 aa)
	ctr9	RNA polymerase II complex component. (1047 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_05229	cdc73	F4PNP6	F4PVI6	Plus3 domain-containing protein.	RNA polymerase II complex component.	0.997
DFA_05229	ctr9	F4PNP6	F4Q3N8	Plus3 domain-containing protein.	RNA polymerase II complex component.	0.997
DFA_05229	leo1	F4PNP6	F4PNT1	Plus3 domain-containing protein.	RNA polymerase II complex component.	0.997
DFA_05229	paf1	F4PNP6	F4Q070	Plus3 domain-containing protein.	RNA polymerase II-associated factor 1.	0.996
DFA_05229	wdr61	F4PNP6	F4QDA5	Plus3 domain-containing protein.	WD40 repeat-containing protein.	0.447
cdc73	DFA_05229	F4PVI6	F4PNP6	RNA polymerase II complex component.	Plus3 domain-containing protein.	0.997
cdc73	ctr9	F4PVI6	F4Q3N8	RNA polymerase II complex component.	RNA polymerase II complex component.	0.999
cdc73	leo1	F4PVI6	F4PNT1	RNA polymerase II complex component.	RNA polymerase II complex component.	0.999
cdc73	paf1	F4PVI6	F4Q070	RNA polymerase II complex component.	RNA polymerase II-associated factor 1.	0.999
cdc73	wdr61	F4PVI6	F4QDA5	RNA polymerase II complex component.	WD40 repeat-containing protein.	0.708
ctr9	DFA_05229	F4Q3N8	F4PNP6	RNA polymerase II complex component.	Plus3 domain-containing protein.	0.997
ctr9	cdc73	F4Q3N8	F4PVI6	RNA polymerase II complex component.	RNA polymerase II complex component.	0.999
ctr9	leo1	F4Q3N8	F4PNT1	RNA polymerase II complex component.	RNA polymerase II complex component.	0.999
ctr9	paf1	F4Q3N8	F4Q070	RNA polymerase II complex component.	RNA polymerase II-associated factor 1.	0.999
ctr9	wdr61	F4Q3N8	F4QDA5	RNA polymerase II complex component.	WD40 repeat-containing protein.	0.654
leo1	DFA_05229	F4PNT1	F4PNP6	RNA polymerase II complex component.	Plus3 domain-containing protein.	0.997
leo1	cdc73	F4PNT1	F4PVI6	RNA polymerase II complex component.	RNA polymerase II complex component.	0.999
leo1	ctr9	F4PNT1	F4Q3N8	RNA polymerase II complex component.	RNA polymerase II complex component.	0.999
leo1	paf1	F4PNT1	F4Q070	RNA polymerase II complex component.	RNA polymerase II-associated factor 1.	0.999
leo1	wdr61	F4PNT1	F4QDA5	RNA polymerase II complex component.	WD40 repeat-containing protein.	0.664