(19 nodes) Nuclear speck network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DFA_11466	Ubiquitin-protein ligase domain-containing protein. (1927 aa)
	DFA_01485	BTB domain-containing protein. (926 aa)
	DFA_04613	FHA domain-containing protein. (543 aa)
	migA	BTB/POZ domain-containing protein. (644 aa)
	DFA_05424	Uncharacterized protein. (291 aa)
	DFA_06036	WD_REPEATS_REGION domain-containing protein. (425 aa)
	DFA_06423	Serine/threonine-protein phosphatase. (1139 aa)
	DFA_03597	DUF1740 family protein. (1326 aa)
	DFA_03024	Uncharacterized protein. (1023 aa)
	DFA_07132	Uncharacterized protein. (285 aa)
	CRNKL1	HAT repeat-containing protein. (669 aa)
	DFA_11640	RapGAP/RanGAP domain-containing protein. (3032 aa)
	DFA_11331	Ubiquitin-protein ligase domain-containing protein. (656 aa)
	thoc7	Uncharacterized protein thoc7. (239 aa)
	DFA_10140	Uncharacterized protein. (339 aa)
	DFA_08206	C2H2-type zinc finger-containing protein. (975 aa)
	prpf8	Pre-mRNA processing factor 8. (2335 aa)
	DFA_02664	Uncharacterized protein. (816 aa)
	smu1	WD40 repeat-containing protein. (600 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRNKL1	DFA_03597	F4QD42	F4PI65	HAT repeat-containing protein.	DUF1740 family protein.	0.456
CRNKL1	DFA_11640	F4QD42	F4QDT2	HAT repeat-containing protein.	RapGAP/RanGAP domain-containing protein.	0.740
CRNKL1	prpf8	F4QD42	F4Q576	HAT repeat-containing protein.	Pre-mRNA processing factor 8.	0.993
DFA_01485	DFA_11331	F4PT23	F4QCD5	BTB domain-containing protein.	Ubiquitin-protein ligase domain-containing protein.	0.571
DFA_01485	DFA_11466	F4PT23	F4QD24	BTB domain-containing protein.	Ubiquitin-protein ligase domain-containing protein.	0.571
DFA_02664	DFA_11331	F4Q010	F4QCD5	Uncharacterized protein.	Ubiquitin-protein ligase domain-containing protein.	0.571
DFA_02664	DFA_11466	F4Q010	F4QD24	Uncharacterized protein.	Ubiquitin-protein ligase domain-containing protein.	0.571
DFA_03024	DFA_11640	F4PGE6	F4QDT2	Uncharacterized protein.	RapGAP/RanGAP domain-containing protein.	0.771
DFA_03024	thoc7	F4PGE6	F4QBT4	Uncharacterized protein.	Uncharacterized protein thoc7.	0.543
DFA_03597	CRNKL1	F4PI65	F4QD42	DUF1740 family protein.	HAT repeat-containing protein.	0.456
DFA_04613	DFA_06423	F4PQ22	F4PIY7	FHA domain-containing protein.	Serine/threonine-protein phosphatase.	0.493
DFA_06423	DFA_04613	F4PIY7	F4PQ22	Serine/threonine-protein phosphatase.	FHA domain-containing protein.	0.493
DFA_11331	DFA_01485	F4QCD5	F4PT23	Ubiquitin-protein ligase domain-containing protein.	BTB domain-containing protein.	0.571
DFA_11331	DFA_02664	F4QCD5	F4Q010	Ubiquitin-protein ligase domain-containing protein.	Uncharacterized protein.	0.571
DFA_11331	migA	F4QCD5	F4PMI2	Ubiquitin-protein ligase domain-containing protein.	BTB/POZ domain-containing protein.	0.571
DFA_11331	prpf8	F4QCD5	F4Q576	Ubiquitin-protein ligase domain-containing protein.	Pre-mRNA processing factor 8.	0.618
DFA_11466	DFA_01485	F4QD24	F4PT23	Ubiquitin-protein ligase domain-containing protein.	BTB domain-containing protein.	0.571
DFA_11466	DFA_02664	F4QD24	F4Q010	Ubiquitin-protein ligase domain-containing protein.	Uncharacterized protein.	0.571
DFA_11466	migA	F4QD24	F4PMI2	Ubiquitin-protein ligase domain-containing protein.	BTB/POZ domain-containing protein.	0.571
DFA_11466	prpf8	F4QD24	F4Q576	Ubiquitin-protein ligase domain-containing protein.	Pre-mRNA processing factor 8.	0.618