(7 nodes) poly(A)+ mRNA export from nucleus network (Cavenderia fasciculata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	helC	DEAD-box RNA helicase. (460 aa)
	dotA	Uncharacterized protein dotA. (838 aa)
	DFA_12161	SAP DNA-binding domain-containing protein. (254 aa)
	DFA_10032	Proteasome component region PCI domain-containing protein. (467 aa)
	DFA_08696	IWS1 family protein. (565 aa)
	rae1	WD40 repeat-containing protein. (329 aa)
	nup93	Nuclear pore protein. (839 aa)

Your Current Organism:

Cavenderia fasciculata

NCBI taxonomy Id: 1054147
Other names: C. fasciculata SH3, Cavenderia fasciculata SH3, Dictyostelium fasciculatum SH3, Dictyostelium fasciculatum strain SH3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFA_10032	rae1	F4Q933	F4Q1V4	Proteasome component region PCI domain-containing protein.	WD40 repeat-containing protein.	0.615
dotA	helC	F4Q8L2	F4PGD4	Uncharacterized protein dotA.	DEAD-box RNA helicase.	0.978
dotA	nup93	F4Q8L2	F4PTW7	Uncharacterized protein dotA.	Nuclear pore protein.	0.879
dotA	rae1	F4Q8L2	F4Q1V4	Uncharacterized protein dotA.	WD40 repeat-containing protein.	0.966
helC	dotA	F4PGD4	F4Q8L2	DEAD-box RNA helicase.	Uncharacterized protein dotA.	0.978
helC	rae1	F4PGD4	F4Q1V4	DEAD-box RNA helicase.	WD40 repeat-containing protein.	0.574
nup93	dotA	F4PTW7	F4Q8L2	Nuclear pore protein.	Uncharacterized protein dotA.	0.879
nup93	rae1	F4PTW7	F4Q1V4	Nuclear pore protein.	WD40 repeat-containing protein.	0.924
rae1	DFA_10032	F4Q1V4	F4Q933	WD40 repeat-containing protein.	Proteasome component region PCI domain-containing protein.	0.615
rae1	dotA	F4Q1V4	F4Q8L2	WD40 repeat-containing protein.	Uncharacterized protein dotA.	0.966
rae1	helC	F4Q1V4	F4PGD4	WD40 repeat-containing protein.	DEAD-box RNA helicase.	0.574
rae1	nup93	F4Q1V4	F4PTW7	WD40 repeat-containing protein.	Nuclear pore protein.	0.924